rs246931540 SNP Detail

Summary

• ID
  rs246931540
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172525215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAACAA AAAAACCCCC
  CAAAAACCCC CAAAACCCAA AACCCCCAAA CCAAAAAAAA CCCAAAACAT CAAACAAACA
  AAACCCAGTC TGTTACACAA GATTGTGACC AATGGTACAT TTGGGATAGG ACAGGTGTTC
  CATTCAGTCA AAGGTCTCTG ATAAGTCTAG GCAGTTGGCC AGGGAAAGTT TGTTCTTGGT
  M
  CTGGGAATGG AATGCTTGTT TTCTTCATTT CCCAATATGG AAAAGAGCAG CTTCCAGGAC
  AGGTTAGCAG ACACTGGAGA TGCAGCCATC ATATGCACAC ACACAAGTGC TCATCTATTA
  AGCTAAAATT TCCCATTATT TTTCTCAGTA GAGCTAGGCC AAGTGGAGCC TTGGGAAGCT
  TTCTCATTTT TCCTGTCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352411478	MGP_WTSI_1_174627779	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246931540					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352411478	MGP_WTSI_1_174627779	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172525215 () rs orientation: forward

Symbol	Name	Function Class
Crp	C-reactive protein, pentraxin-related	408 bp upstream
D1Mit149	DNA segment, Chr 1, Massachusetts Institute of Technology 149	1581 bp proximal
D1Mit149.1	DNA segment, Chr 1, Massachusetts Institute of Technology 149.1	1429 bp proximal
Rr423653	regulatory region 423653	within coordinates
Rr423654	regulatory region 423654	246 bp proximal
Tssr10246	transcription start site region 10246	398 bp upstream
Tssr10247	transcription start site region 10247	1341 bp upstream
Tssr10248	transcription start site region 10248	1407 bp upstream
Tssr10249	transcription start site region 10249	1431 bp upstream
Tssr10250	transcription start site region 10250	1486 bp upstream
Tssr10251	transcription start site region 10251	1542 bp upstream
Tssr10252	transcription start site region 10252	1608 bp upstream
Tssr10253	transcription start site region 10253	1657 bp upstream
Tssr10254	transcription start site region 10254	1722 bp upstream