rs246939554 SNP Detail

Summary

• ID
  rs246939554
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40828980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gaagcatag caattgttga aagccagaag
  tctggcaggg agctgggagt cagctaagac ttaggtgtgt gcccacctag tctccaggtc
  tttacctgct ctaccttcct gaacttcctg gcatggtttt atgtccaacc tcaccccacc
  M
  tgtggctcta ctcgtaggag atccacctga agagcaagct gtacatttgc tgaaaatatg
  tgccacgcac tccggtcgag ttagcttggc aggccaagaa gcctggaagc cactcacgag
  gcagagagtt tcacggaaac tcacctcctg                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325386001	CHEV_17_40655038	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246939554					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40828980 () rs orientation: forward

Symbol	Name	Function Class
Esp8	exocrine gland secreted peptide 8	1933 bp upstream
Gm49846	predicted gene, 49846	1279 bp downstream
Rr337560	regulatory region 337560	379 bp proximal
Rr392616	regulatory region 392616	within coordinates
Tssr144637	transcription start site region 144637	1930 bp upstream
Tssr144638	transcription start site region 144638	1941 bp upstream