rs246946103 SNP Detail

Summary

• ID
  rs246946103
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35964149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTCGCC CCCACTGCCT
  GCAGGGTGCC TGGCGGGCTG ATCAAGTTTG ACCTTTTTTT TTTTTTTTTT TTTTTTCCCG
  TCAAAGTATA TCACCTCCAC CTCCGCCGGC TAGGCGGCCT CTCTTCTGTC CTTTTCGGCC
  TTGGGGAGTC TCGGACTGCC TCTCCGCGTG TGCCTAGCTG CGTGCAAAGC CGGGGACGCG
  C
  GGGGGGGGGG GGTGTTTGTT CCTCAGCTGC AGGTCTGCAG GGGGCGGGCA TCCCAGGCTC
  CTGCCACGCT GCTCTGGCCC CGAATTTACC CTCGAAGTCC CGCCCGAACC CCCTCCCTTT
  CGCATCCCTG GAGCCAGGGC TGAACCGCCG CGAGAGGAAT GTGTTAATTT TCTTACTGGG
  GGAAGTTGTC CTCGCCCGGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss400266041	MGP_WTSI_18_35990750	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs246946103					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400266041	MGP_WTSI_18_35990750	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35964149 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9844	CpG island 9844	within coordinates
Cpgi9845	CpG island 9845	202 bp proximal
Cpgi9846	CpG island 9846	537 bp proximal
Cxxc5	CXXC finger 5	within coordinates
Gm29417	predicted gene 29417	3 bp upstream
Gm50371	predicted gene, 50371	within coordinates
Rr352723	regulatory region 352723	within coordinates
Rr370361	regulatory region 370361	1054 bp upstream
Tssr150568	transcription start site region 150568	1340 bp downstream
Tssr150569	transcription start site region 150569	1301 bp downstream
Tssr150570	transcription start site region 150570	1275 bp downstream
Tssr150571	transcription start site region 150571	1257 bp downstream
Tssr150572	transcription start site region 150572	1245 bp downstream
Tssr150573	transcription start site region 150573	985 bp downstream
Tssr150574	transcription start site region 150574	888 bp downstream
Tssr150575	transcription start site region 150575	733 bp downstream
Tssr150576	transcription start site region 150576	123 bp downstream
Tssr152918	transcription start site region 152918	959 bp upstream