rs246946423 SNP Detail

Summary

• ID
  rs246946423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26316333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCCGGG CGGTGGTGGC
  GCACGCCCTT AATCCCGGCA CTTGGGAGGC AGAGGCAGGC AAATTTCTGA CTTTGAGGTC
  AGCCTGGTCT ACAGAGTGAG TTCCAGGACA GCCAGGGCTA CACAAAGAAA CCCTGTCTCA
  GAAAACAAAA ACAAAAACAA ACAAACAAAC AAAAGCATTG CCACTAATCT AGCAGTGGTG
  Y
  AGCACTCTGG TTGGGTTTTT TGTTTTTTGT TTGTTTGGTT GGTTTGGTTT TTCCAGGCAG
  GGTTTCTCTG TGTAGCCCTG GCTGTCCTGG AACTCACTCT GTAGACCAGG CTGGCCTCCT
  CTGCATCTGG AACACTGCAA TTAAAGGCTT GCACTGGCAC TGACCTGCTA GTGGCGCTCG
  CCTTTAATCC CAACACTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397891222	MGP_WTSI_17_26234304	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246946423					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397891222	MGP_WTSI_17_26234304	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26316333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8797	CpG island 8797	1696 bp distal
Gm8186	predicted gene 8186	1632 bp downstream
Nme4	NME/NM23 nucleoside diphosphate kinase 4	1757 bp upstream
Tssr146914	transcription start site region 146914	1910 bp upstream
Tssr146915	transcription start site region 146915	1898 bp upstream
Tssr146916	transcription start site region 146916	1879 bp upstream
Tssr146917	transcription start site region 146917	1845 bp upstream
Tssr146918	transcription start site region 146918	1898 bp downstream