rs246946884 SNP Detail

Summary

• ID
  rs246946884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:5857471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGGGTCC ACGAAGTCTT
  TCCTAAAACC ATCAAAAATA AGTACATTTC AGAATTCAGA ACATTCAAGT TGCTAAAAAA
  ATGGTGAATG TCCTGTGTGA TTACCTATCT TGATGAGGTA GTGTGATGAG GGTCTGTAAC
  ATCATATATA CAAAGTTGTG TTGACATTTT GTAGTAGAAG ACAAGAAGAA AATATGTTCA
  Y
  GCTCAGCAAT TTGGATCTGA ACTCATCCTG CAAGGGATTC CTGTATAGTC AGTCAGTGGT
  TGGGAGCACT ACCTCTGCCG CAGTGGGACT TAGTTCCCAG CACCCACACT GCAGCTTGTA
  CCACTCTAGT TCCAAGGGAT CCAACATTCT CATCAGGGAC ACACATGATG TGTCCTCCTA
  TATGCTGGCA AATACTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323878279	CHEV_12_5814277	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246946884					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:5857471 () rs orientation: forward

Symbol	Name	Function Class
Gm32442	predicted gene, 32442	within coordinates
Tssr112600	transcription start site region 112600	722 bp upstream
Tssr112601	transcription start site region 112601	793 bp upstream