rs246947941 SNP Detail

Summary

• ID
  rs246947941
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:91015274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCTGCAC GTTGGGCCGG
  TCTATAGGTC ACCAACAGGG TTGAGTCAAA ATCTTGGTCC CATAACCCAA ATCACAACTC
  CCAAATAGGG ACATGTCCCA CCCAACCTCT CTCATCCACT GTAGGGACTA TAGCCATCCT
  GGGCGAAACC CTCCTGGGCA AAAGTCTCTT GCTCCGTTTC CCTCTGCTCC CCCCCCCCCC
  M
  CCACCACCAT ACCTGCAGAG AAGATGCTGA TGGCAATGAG CAGAGCAAAC TCAGCATCAT
  TGAGTTGCAG CTCATTCATG GCTCTGGAGA ACTCAAAGAT GGGGTTGATG AACTCCACCT
  GCAGCCCTGG GGAAGAAGGA GGCTGAGGAT CATGGCGGGA GCAGGAAGAA CACCCTGTAA
  CTCAACTTCC TCAGGCTAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354809317	MGP_WTSI_2_91025086	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246947941					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354809317	MGP_WTSI_2_91025086	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91015274 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	1505 bp distal
Madd	MAP-kinase activating death domain	1870 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	Intron
Rr367225	regulatory region 367225	740 bp downstream
Rr397125	regulatory region 397125	1529 bp downstream
Rr560663	regulatory region 560663	1392 bp distal
Rr560665	regulatory region 560665	621 bp distal
Tssr25161	transcription start site region 25161	1996 bp upstream
Tssr25162	transcription start site region 25162	1977 bp upstream
Tssr25163	transcription start site region 25163	1869 bp upstream
Tssr25164	transcription start site region 25164	1089 bp upstream
Tssr25165	transcription start site region 25165	1030 bp upstream
Tssr25166	transcription start site region 25166	968 bp upstream
Tssr25167	transcription start site region 25167	906 bp upstream