rs246954143 SNP Detail

Summary

• ID
  rs246954143
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72438363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCCTGA GGCCACATGG
  ACAAAGCAAG AGAGTTTCAG GCCAAGGCAG GGAACAGAGC ACTCAAAAGA CCACGCAATC
  CAAGCCAATC AGATTCACCA CCCACTAGAA GTCTGAAAGG TGGCAGGGCC TCCTAGCTCA
  AAGTCCATCC AGGAAAGTGG CCAGAAAATC TGACAGGGCC AAGTCTGATA GAAACACTGT
  S
  AGAGAAGTTA CGGGCTGGGA GGCTCATTAC AGCCACAGGC ACTGAGAAAG GTCAGTGCGA
  GCTGTGCAGC TGTTCCATCT GGTGCCAGAG GCTTTGGCTG CTGTCTTCTA CACCCAGGCG
  CTTAGCCTTC CTGACCAGCC CCACCTAGAA AAGCTAATTC TTCTGCTCTT CTAAGAGGAA
  TGATTTGTTG GAGGCAGGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378020702	MGP_WTSI_9_72378888	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246954143					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378020702	MGP_WTSI_9_72378888	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72438363 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	within coordinates
Cpgi22017	CpG island 22017	387 bp proximal
Rfx7	regulatory factor X, 7	1159 bp upstream
Rr401508	regulatory region 401508	423 bp downstream
Rr401509	regulatory region 401509	538 bp upstream
Rr682766	regulatory region 682766	605 bp distal
Rr682767	regulatory region 682767	660 bp distal
Rr682768	regulatory region 682768	104 bp distal
Rr682769	regulatory region 682769	69 bp proximal
Rr682770	regulatory region 682770	669 bp proximal
Rr682771	regulatory region 682771	870 bp proximal
Tssr86008	transcription start site region 86008	647 bp upstream
Tssr86009	transcription start site region 86009	852 bp upstream
Tssr86010	transcription start site region 86010	1103 bp upstream
Tssr86011	transcription start site region 86011	1133 bp upstream
Tssr86012	transcription start site region 86012	1706 bp upstream