rs246955271 SNP Detail

Summary

• ID
  rs246955271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69489687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    accggtgtt acaaagtacc tgtgcttctt
  gcccagcact catgtaagac agctcacaag tgcccctaac tcctgtaact gcagctccag
  gggagccaaa cctctggcct cctcagtcag tgcacccacg tacacaaacc cacactcaga
  Y
  gcacaTGCAG ATACATCATT TCtttttttt tttttaaata aaaattGAAG TTAggggctg
  gcacacactt gcaatccctg tattcaggaa ggaaagctca gaggactagg agtccaggcc
  agccggcttt ggcaatgaat tggtcttagg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323730628	CHEV_11_69412363	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246955271					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69489687 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	875 bp downstream
Gm72066	predicted gene, 72066	868 bp upstream
Rr386229	regulatory region 386229	546 bp upstream
Rr450033	regulatory region 450033	687 bp proximal
Rr450034	regulatory region 450034	728 bp proximal
Rr450035	regulatory region 450035	1180 bp proximal
Tssr3544	transcription start site region 3544	1834 bp downstream
Tssr102487	transcription start site region 102487	1152 bp upstream
Tssr108712	transcription start site region 108712	1146 bp downstream
Tssr108713	transcription start site region 108713	1291 bp downstream
Tssr108714	transcription start site region 108714	1373 bp downstream
Tssr108715	transcription start site region 108715	1386 bp downstream
Tssr108716	transcription start site region 108716	1698 bp downstream
Tssr108717	transcription start site region 108717	1723 bp downstream
Tssr108718	transcription start site region 108718	1782 bp downstream
Tssr108719	transcription start site region 108719	1793 bp downstream
Tssr108720	transcription start site region 108720	1797 bp downstream
Tssr108721	transcription start site region 108721	1811 bp downstream
Tssr108722	transcription start site region 108722	1892 bp downstream
Tssr108723	transcription start site region 108723	1920 bp downstream
Tssr108724	transcription start site region 108724	1973 bp downstream
Tssr108725	transcription start site region 108725	1997 bp downstream