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rs246965096 SNP Detail
Summary
  • ID
    rs246965096
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44128839 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTTTTTGTTT TTTTTTTTTG
CTTTTTTGTT TTTGTTTTTT GTGGTTTTTA GAGACAGGGT TTCTCTGTGT AGCCCTGGCT
GTCCTGGAAT TCACTCTGTA GGCCAGGCTG GCCCCGAACT CAGAAATCCA CCTGCCTCTG
CCTCCCGAGT TCTGGGATTA AAGGCATGTG CCACCATGCC CGGCTCATCT CATTTTCTTA
Y
TCTCCTTCCT ACTTCTCCAT TGCTTCCTCT TTCCCCTCTC TCCTGCCTTT TCATTTACTA
TTCTTTTCCC CTTCTCCTCT TCTTCTTCAA TCTCCTGTCC TCTTCCTTAC CACTCCTCTT
TTCCTTCTCC ATCTTCTTAT TCATAGTCCT CGTTCCCCCC ATATCTCTTC TTCCCACTTC
TTCTCCTGCT CCTCATATGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156115 MGP_WTSI_7_51734785 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs246965096 SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156115 MGP_WTSI_7_51734785 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128839 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2225 transcription start site region 2225 1996 bp downstream
Tssr2226 transcription start site region 2226 1470 bp downstream
Tssr2227 transcription start site region 2227 395 bp downstream
Tssr2228 transcription start site region 2228 663 bp upstream
Tssr2229 transcription start site region 2229 939 bp upstream
Tssr2230 transcription start site region 2230 1118 bp upstream
Tssr2231 transcription start site region 2231 1251 bp upstream
Tssr2232 transcription start site region 2232 1426 bp upstream
Tssr2233 transcription start site region 2233 1459 bp upstream
Tssr2234 transcription start site region 2234 1618 bp upstream
Tssr66245 transcription start site region 66245 1955 bp downstream
Tssr66246 transcription start site region 66246 1927 bp downstream
Tssr66247 transcription start site region 66247 1880 bp downstream
Tssr66248 transcription start site region 66248 1839 bp downstream
Tssr66249 transcription start site region 66249 1816 bp downstream
Tssr66250 transcription start site region 66250 1797 bp downstream
Tssr66251 transcription start site region 66251 1772 bp downstream
Tssr66252 transcription start site region 66252 1741 bp downstream
Tssr66253 transcription start site region 66253 1713 bp downstream
Tssr66254 transcription start site region 66254 1665 bp downstream
Tssr66255 transcription start site region 66255 1638 bp downstream
Tssr66256 transcription start site region 66256 1589 bp downstream
Tssr66257 transcription start site region 66257 1578 bp downstream
Tssr66258 transcription start site region 66258 1535 bp downstream
Tssr66259 transcription start site region 66259 1499 bp downstream
Tssr66260 transcription start site region 66260 1392 bp downstream
Tssr66261 transcription start site region 66261 1371 bp downstream
Tssr66262 transcription start site region 66262 1364 bp downstream
Tssr66263 transcription start site region 66263 1352 bp downstream
Tssr66264 transcription start site region 66264 1328 bp downstream
Tssr66265 transcription start site region 66265 1285 bp downstream
Tssr66266 transcription start site region 66266 1268 bp downstream
Tssr66267 transcription start site region 66267 1231 bp downstream
Tssr66268 transcription start site region 66268 1215 bp downstream
Tssr66269 transcription start site region 66269 1179 bp downstream
Tssr66270 transcription start site region 66270 1144 bp downstream
Tssr66271 transcription start site region 66271 1112 bp downstream
Tssr66272 transcription start site region 66272 1060 bp downstream
Tssr66273 transcription start site region 66273 1042 bp downstream
Tssr66274 transcription start site region 66274 1037 bp downstream
Tssr66275 transcription start site region 66275 1017 bp downstream
Tssr66276 transcription start site region 66276 997 bp downstream
Tssr66277 transcription start site region 66277 977 bp downstream
Tssr66278 transcription start site region 66278 933 bp downstream
Tssr66279 transcription start site region 66279 888 bp downstream
Tssr66280 transcription start site region 66280 866 bp downstream
Tssr66281 transcription start site region 66281 826 bp downstream
Tssr66282 transcription start site region 66282 809 bp downstream
Tssr66283 transcription start site region 66283 795 bp downstream
Tssr66284 transcription start site region 66284 783 bp downstream
Tssr66285 transcription start site region 66285 769 bp downstream
Tssr66286 transcription start site region 66286 730 bp downstream
Tssr66287 transcription start site region 66287 694 bp downstream
Tssr66288 transcription start site region 66288 669 bp downstream
Tssr66289 transcription start site region 66289 587 bp downstream
Tssr66290 transcription start site region 66290 549 bp downstream
Tssr66291 transcription start site region 66291 523 bp downstream
Tssr66292 transcription start site region 66292 491 bp downstream
Tssr66293 transcription start site region 66293 469 bp downstream
Tssr66294 transcription start site region 66294 445 bp downstream
Tssr66295 transcription start site region 66295 180 bp downstream
Tssr66296 transcription start site region 66296 9 bp downstream
Tssr66297 transcription start site region 66297 within coordinates
Tssr66298 transcription start site region 66298 18 bp upstream
Tssr66299 transcription start site region 66299 87 bp upstream
Tssr66300 transcription start site region 66300 94 bp upstream
Tssr66301 transcription start site region 66301 118 bp upstream
Tssr66302 transcription start site region 66302 132 bp upstream
Tssr66303 transcription start site region 66303 173 bp upstream
Tssr66304 transcription start site region 66304 181 bp upstream
Tssr66305 transcription start site region 66305 191 bp upstream
Tssr66306 transcription start site region 66306 225 bp upstream
Tssr66307 transcription start site region 66307 282 bp upstream
Tssr66308 transcription start site region 66308 335 bp upstream
Tssr66309 transcription start site region 66309 356 bp upstream
Tssr66310 transcription start site region 66310 394 bp upstream
Tssr66311 transcription start site region 66311 471 bp upstream
Tssr66312 transcription start site region 66312 487 bp upstream
Tssr66313 transcription start site region 66313 508 bp upstream
Tssr66314 transcription start site region 66314 516 bp upstream
Tssr66315 transcription start site region 66315 536 bp upstream
Tssr66316 transcription start site region 66316 595 bp upstream
Tssr66317 transcription start site region 66317 607 bp upstream
Tssr66318 transcription start site region 66318 652 bp upstream
Tssr66319 transcription start site region 66319 675 bp upstream
Tssr66320 transcription start site region 66320 702 bp upstream
Tssr66321 transcription start site region 66321 720 bp upstream
Tssr66322 transcription start site region 66322 740 bp upstream
Tssr66323 transcription start site region 66323 786 bp upstream
Tssr66324 transcription start site region 66324 815 bp upstream
Tssr66325 transcription start site region 66325 845 bp upstream
Tssr66326 transcription start site region 66326 886 bp upstream
Tssr66327 transcription start site region 66327 900 bp upstream
Tssr66328 transcription start site region 66328 916 bp upstream
Tssr66329 transcription start site region 66329 955 bp upstream
Tssr66330 transcription start site region 66330 974 bp upstream
Tssr66331 transcription start site region 66331 988 bp upstream
Tssr66332 transcription start site region 66332 1009 bp upstream
Tssr66333 transcription start site region 66333 1057 bp upstream
Tssr66334 transcription start site region 66334 1069 bp upstream
Tssr66335 transcription start site region 66335 1078 bp upstream
Tssr66336 transcription start site region 66336 1087 bp upstream
Tssr66337 transcription start site region 66337 1105 bp upstream
Tssr66338 transcription start site region 66338 1161 bp upstream
Tssr66339 transcription start site region 66339 1212 bp upstream
Tssr66340 transcription start site region 66340 1257 bp upstream
Tssr66341 transcription start site region 66341 1302 bp upstream
Tssr66342 transcription start site region 66342 1364 bp upstream
Tssr66343 transcription start site region 66343 1396 bp upstream
Tssr66344 transcription start site region 66344 1541 bp upstream
Tssr66345 transcription start site region 66345 1574 bp upstream
Tssr66346 transcription start site region 66346 1630 bp upstream
Tssr66347 transcription start site region 66347 1668 bp upstream
Tssr66348 transcription start site region 66348 1709 bp upstream
Tssr66349 transcription start site region 66349 1733 bp upstream
Tssr66350 transcription start site region 66350 1761 bp upstream
Tssr66351 transcription start site region 66351 1769 bp upstream
Tssr66352 transcription start site region 66352 1805 bp upstream
Tssr66353 transcription start site region 66353 1879 bp upstream
Tssr66354 transcription start site region 66354 1893 bp upstream
Tssr66355 transcription start site region 66355 1920 bp upstream
Tssr66356 transcription start site region 66356 1937 bp upstream
Tssr66357 transcription start site region 66357 1951 bp upstream
Tssr66358 transcription start site region 66358 1963 bp upstream
Tssr66359 transcription start site region 66359 1989 bp upstream
Tssr72199 transcription start site region 72199 1932 bp upstream
Tssr72200 transcription start site region 72200 974 bp upstream
Tssr72201 transcription start site region 72201 464 bp upstream
Tssr72202 transcription start site region 72202 378 bp downstream
Tssr72203 transcription start site region 72203 764 bp downstream
Tssr72204 transcription start site region 72204 1360 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory