rs246966693 SNP Detail

Summary

• ID
  rs246966693
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54750624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAAAATG TGATCTTCAT
  TACCACAAAT CTACTAGAAC CGGCATTACA TTGTAGCTAA TCATATCTTT TTACTTATTA
  TTTATGCACT GTTGGGCATG GAAGCCAATG CCTTGAAAAT GCTAAGGGCT CCAACTTAAA
  AGTTAAATAC AACCTCAGCC CTACTAAGAA ACTTCTTTTC AAACGCAAAA AGTAGCTGGG
  Y
  GTAGTGGCTC GGGAGTCAGA TTCCCAGCAC TTAGCATGAA GATTGCTGAG AATTGGCCGC
  CGGTGTGAGC TACAAGTCTG AGGCCAGCCC CTCCTAATTC TTAATCAAAC TTCAGGTGTC
  TGCCTATAAG TCCCCGTGAT TCTTAAATTT CGAGACAAGA TCTATGTTGC CTGGGCTTGC
  CATCAACAAG TAGGCTCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383427714	MGP_WTSI_11_54673300	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	T	T	C	T	T	C	C	C	C	T	C	C	C	C	C	T	C	C	T	T	T	C	T	C	T	C	C	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246966693					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	T	C	C	T	T	C	T	T	C	C	C	C	T	C	C	C	C	C	T	C	C	T	T	T	C	T	C	T	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383427714	MGP_WTSI_11_54673300	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54750624 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2891	CpG island 2891	689 bp proximal
Gm31490	predicted gene, 31490	16 bp upstream
Gm57377	predicted gene, 57377	989 bp upstream
Lyrm7	LYR motif containing 7	within coordinates
Rr386093	regulatory region 386093	within coordinates
Rr447402	regulatory region 447402	1090 bp distal
Rr447403	regulatory region 447403	274 bp distal
Rr447404	regulatory region 447404	499 bp proximal
Rr447405	regulatory region 447405	801 bp proximal
Rr447406	regulatory region 447406	1000 bp proximal
Rr447407	regulatory region 447407	1104 bp proximal
Rr447408	regulatory region 447408	1306 bp proximal
Tssr3501	transcription start site region 3501	969 bp upstream
Tssr101539	transcription start site region 101539	992 bp upstream
Tssr101540	transcription start site region 101540	1217 bp upstream
Tssr108005	transcription start site region 108005	766 bp downstream