rs246968956 SNP Detail

Summary

• ID
  rs246968956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59837883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agGGTTTTA ATGGTTTCTC GTCACTTTCA
  TTCCACAGTA GTAGTGATAG CTACTGTTTG CTAACACTGC CGTTTTACCA TGCATTCTCC
  CAGATGTCTC CAGAGGTGTC TTCAAGTCTT TTCTGGCACA CCTGGTTCCA TCTTAGACCA
  Y
  TCTCTTCTCC CTTCTTCCTC AGGAATCATG GCCCTTCCCC TAAGGTGGAG AGGTCCTGGG
  TTAGAAGGAA ATCCTACAGT TTCCTGCAGT GAGAAATGTT CTTCTAATCA GACACTTAGT
  TCCACAGGGG CCTGTATTCC CTAACTCCAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323699682	CHEV_11_59760559	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246968956					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59837883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	784 bp proximal
Med9	mediator complex subunit 9	1149 bp upstream
Med9os	mediator complex subunit 9, opposite strand	within coordinates
Rr448290	regulatory region 448290	673 bp proximal
Rr448291	regulatory region 448291	1078 bp proximal
Tssr101871	transcription start site region 101871	1152 bp upstream
Tssr108257	transcription start site region 108257	1022 bp downstream
Tssr108258	transcription start site region 108258	1050 bp downstream
Tssr108259	transcription start site region 108259	1118 bp downstream