rs246969477 SNP Detail

Summary

• ID
  rs246969477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98892505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTTATT ATTGTTTTAA
  ATCATATTTA GGCTGGCTCA GGTGTGGTGG CGTTCACCTA TAACCCCAGC ACTCGGGGGC
  CGGCCGGGAA GAGTGCCGGG CCACCAGGAG TCGGAGTGAC AGACAGTTGA GAGAAGCCAT
  ACCGCTGGGT CCTCTGGGAA AGCAGCCCCG TGCTCTTAAG TGCTGAGCCA AACCTTTGGC
  Y
  TCCATACTCC CATTATGAAT GGACAGCCAG GTTTCAGTGT GATTAAATAA CTTCTAACAT
  AATTAAATAC CATAGTCCTG TACTAGAGAC GGGGTCGGTG GGACTGGACA GGTTCACACA
  CGTGTTCATT CATGGATGTT CCTGTGTCGC AGCTGCCTCA GAGGGTTTAG TAATAAATCA
  AGTAAGAACA AGGACAGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323134325	CHEV_9_98910871	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs246969477					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98892505 () rs orientation: forward

Symbol	Name	Function Class
Gm1123	predicted gene 1123	within coordinates
Rr198304	regulatory region 198304	896 bp proximal
Rr211364	regulatory region 211364	1505 bp distal