rs246970567 SNP Detail

Summary

• ID
  rs246970567
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133854043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGAGTT CCTGGCTCCA
  CGGCCTGGCC TGATGTACTC TGCTGGCCAT CCAGGGACAT GGATTCAGCT GCCTTTGAGA
  TCTTGAGCAC CTTCCCGCCC ACGGTCTACC AGGACGATAC AGTGACTCTG CAGGCCGCAG
  GCCTGGTTCC CAATGCAACG CTGCTGTTGC GGACCCGCAG AGCCCTGCTG TCGAACCCCA
  K
  CTCCCGCCCA GGCTCACTGC CCTGAATAAA GTGCCGCCCC TGACATAAGC TTCACAAGGC
  TCTCCAGAGA GGGGTTAGGC CTGTAACTGT AGGGAGGGGG TGGTAGAGAT GCTCAGGCCT
  ATAACTGGAG CCCCAGCCGG CATAGCCACT GACTCTTTGT CCCCTGGGTT CCTGTTCTCC
  AAGTTGTACT AAGTGAATCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363332246	MGP_WTSI_4_133682647	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246970567					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363332246	MGP_WTSI_4_133682647	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133854043 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15028	CpG island 15028			1520 bp proximal
Rr601571	regulatory region 601571			1994 bp distal
Rr601575	regulatory region 601575			1997 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3			674 bp downstream
Tssr39535	transcription start site region 39535			803 bp upstream
Tssr39536	transcription start site region 39536			886 bp upstream
Tssr39537	transcription start site region 39537			1176 bp upstream
Tssr43866	transcription start site region 43866			895 bp downstream
Tssr43867	transcription start site region 43867			955 bp downstream
Tssr43868	transcription start site region 43868			991 bp downstream
Tssr43869	transcription start site region 43869			1066 bp downstream
Tssr43870	transcription start site region 43870			1219 bp downstream
Tssr43871	transcription start site region 43871			1267 bp downstream
Tssr43872	transcription start site region 43872			1297 bp downstream
Tssr43873	transcription start site region 43873			1320 bp downstream
Tssr43874	transcription start site region 43874			1350 bp downstream
Tssr43875	transcription start site region 43875			1948 bp downstream
Tssr43876	transcription start site region 43876			1975 bp downstream
Ubxn11	UBX domain protein 11			Coding-NonSynonymous
				Noncoding-Transcript-Variant