rs246971015 SNP Detail

Summary

• ID
  rs246971015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91445449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGCCGGCC GGTGTCTATG
  GCCGGAAAGG GTCTCTAACG GCCGCTTCTT GGGTAACCTT AAAACTTCTT TATTATTGTA
  CGCTTGCGAT CGTTTGGCCA CCGCAGTCTA TTTATTAGAC GATTTGGGCC CCGGTTACTG
  CTCTGTGCTT CAGACCGGAT TAGCACTCTT TTCACAGTTG TAAATTGAAA CATCTCAGTT
  Y
  GATGTAAGAT ACAAGATCAA ATATTCGAGA GGATGATAGG AGGGGGCTTT GGAACTGCTG
  GATGCGTAAT TTGATTGAGT AGAAAGTGGA GTATGTGTTA TTTTTGTTAT TTTTCCTTGC
  TACCCCGACT TAACGGACGG ATTTTTGTCA CTGCCAGTAG ACTTCAGAGG TTAGCCTTGG
  TTCTCAGAAT TTAATGTTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397326549	MGP_WTSI_16_91648806	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	T	T	T	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246971015					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	T	T	T	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	T	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397326549	MGP_WTSI_16_91648806	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91445449 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8459	CpG island 8459	167 bp distal
Gart	phosphoribosylglycinamide formyltransferase	1609 bp upstream
Rr325570	regulatory region 325570	within coordinates
Rr404966	regulatory region 404966	702 bp downstream
Rr404967	regulatory region 404967	287 bp upstream
Son	Son DNA binding protein	within coordinates
Tssr139422	transcription start site region 139422	1455 bp downstream
Tssr139423	transcription start site region 139423	703 bp downstream
Tssr139424	transcription start site region 139424	656 bp downstream
Tssr142101	transcription start site region 142101	1601 bp upstream
Tssr142102	transcription start site region 142102	911 bp upstream
Tssr142103	transcription start site region 142103	847 bp upstream