rs246978741 SNP Detail

Summary

• ID
  rs246978741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107007798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACCCAGG CTAGACTCTG
  GATCCTGCAT TGACAACCGA TCTTCATAGC CAATCTTCCA GGAGCCAGAA GCCAAACGAG
  TCTGGTCTTA CAAGACATTG ATTTCCCTCT AAGCCCACCA AAGCCTTCTA GCTTTGTAGC
  TCTAGGTAGG GTCCAATCTT TCACCCACCT TATAGGCTCC CACTGGGAAA TGGCCGAATC
  Y
  CTTAGAACCT TCCCTTGCAG GGAAGCAGGC TTTCAGAGTT TCTGATACTT GCATAAAGAG
  AACTGTCTTA GCAGAAAGGG CCAGGGAAGA GTCTTTCACA CACCAGAGCC CCTCTGAACA
  TCAGAGCTCA GAAGTTCATT TCAATGAGTC CCTCTGTGGA GTATCCGTGT AGGCGGTTCT
  GACAGGGGGC CTGCAGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359138118	MGP_WTSI_3_106903400	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	C	C	C	T	C	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246978741					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	C	T	T	T	C	C	C	T	C	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359138118	MGP_WTSI_3_106903400	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107007798 () rs orientation: forward

Symbol	Name	Function Class
A930002I21Rik	RIKEN cDNA A930002I21 gene	1857 bp downstream
Cpgi13670	CpG island 13670	435 bp proximal
Kcna2	potassium voltage-gated channel, shaker-related subfamily, member 2	664 bp upstream
Rr77034	regulatory region 77034	202 bp proximal
Tssr31156	transcription start site region 31156	446 bp upstream
Tssr31157	transcription start site region 31157	545 bp upstream
Tssr31158	transcription start site region 31158	785 bp upstream
Tssr31159	transcription start site region 31159	1069 bp upstream
Tssr31160	transcription start site region 31160	1096 bp upstream
Tssr31161	transcription start site region 31161	1114 bp upstream
Tssr31162	transcription start site region 31162	1178 bp upstream
Tssr31163	transcription start site region 31163	1218 bp upstream
Tssr31164	transcription start site region 31164	1284 bp upstream