rs246979409 SNP Detail

Summary

• ID
  rs246979409
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151584110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTGTGCC CCAATCTCCA
  TCAAGATTTT TTTAACCACC TGTTGTTTCT CCATGTTTCT TGAAGTCCAA TACTTTTTTG
  TAGACAAATA AATTTTGCCA TGTTGGTTGG TACCATGACC CAAACCATTG TCATTTTTTT
  TTTCTTGGTT GCCTGGCATC AGCCTTGTAT GCTACACTGG TTTCACCCTA CAACCAGAGA
  R
  ATTCTGTTAA AACACAGGGA AGACCATGTT CCTTAGGCCC AAGCCACACC TCAAAGGCGA
  AGTTCACTCT AGGTCTGTCA CCCTCTCACT CCACAGGCCC TGTGCCTTTC TGATATCACC
  TCCAAGTGTC CTTTCATTCT CTGATCTCCT TGGCTCCAGT GACCTTGACT TCTCTCAGCT
  CTCATGCCTA GGTTAACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356135998	MGP_WTSI_2_151567926	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A	A	A	G	A	G	A	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246979409					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A	A	A	G	A	G	A	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356135998	MGP_WTSI_2_151567926	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151584110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12424	CpG island 12424	724 bp distal
Psmf1	proteasome (prosome, macropain) inhibitor subunit 1	within coordinates
Rr567192	regulatory region 567192	1776 bp distal
Rr567193	regulatory region 567193	942 bp distal
Rr567194	regulatory region 567194	390 bp distal
Rr567195	regulatory region 567195	within coordinates
Rr567196	regulatory region 567196	464 bp proximal
Tssr26747	transcription start site region 26747	1020 bp upstream
Tssr26748	transcription start site region 26748	1013 bp upstream
Tssr26749	transcription start site region 26749	972 bp upstream
Tssr26750	transcription start site region 26750	964 bp upstream
Tssr26751	transcription start site region 26751	881 bp upstream
Tssr26752	transcription start site region 26752	1952 bp downstream