rs246987200 SNP Detail

Summary

• ID
  rs246987200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:92490866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTGCTG CAGAGCCAGC
  ATGACACCAG AGGCCTCACC TGGCGCTGCC AGCCTGAATT TTACTGAGTC CTCTACCTTT
  GATGCTGTCA AAGCATGATA GGTCCCTGCT GTCATTTCAG GGGATTTGTT TCATTGAGAA
  TCAAAAGTTC TCCAGAAAAT TGGAATTTAG AAATTAGACA CCATCCCTTT AAATAGGACC
  R
  AAGGGGTCCC TGAGATACAG AACTTTCACT TTAAAAGCAA GACAGGAGCC AGGAATGCAG
  CTGTGGCAGA ATTTGTTTAG CTTGAATAAG ACCCTGGGTT CAAAGCCATG GCCTTTGAAC
  TCAGCAGAGT CCAGCAAAGA ATTAACAAAA ACCCAGGAAG AGTATGCCTT ACTCTTTTCA
  GCAAAGGCCT GTGCCTTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358859046	MGP_WTSI_3_92387481	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246987200					SNP	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358859046	MGP_WTSI_3_92387481	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:92490866 () rs orientation: forward

Symbol	Name	Function Class
Smcp	sperm mitochondria-associated cysteine-rich protein	308 bp downstream
Tssr30302	transcription start site region 30302	571 bp upstream
Tssr30303	transcription start site region 30303	826 bp upstream
Tssr30304	transcription start site region 30304	847 bp upstream
Tssr30305	transcription start site region 30305	866 bp upstream
Tssr34305	transcription start site region 34305	440 bp downstream
Tssr34306	transcription start site region 34306	606 bp downstream
Tssr34307	transcription start site region 34307	803 bp downstream
Tssr34308	transcription start site region 34308	838 bp downstream
Tssr34309	transcription start site region 34309	871 bp downstream
Tssr34310	transcription start site region 34310	881 bp downstream
Tssr34311	transcription start site region 34311	919 bp downstream
Tssr34312	transcription start site region 34312	944 bp downstream