rs246987854 SNP Detail

Summary

• ID
  rs246987854
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:21320955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGCCCG CGGCCTCCAC
  TGGCCGCCCT CCCCTACGCA GCCGCTCCAC ACCAGGGCCC GGCTCGCCCC CTCCCTGCCC
  CCCGGGCCTG GCCGCCCAGA CCCCCCGGGA GGCCTGGCCC TCCCTGACAC GCCCTCGCCC
  GCCCGCCCGC CCGCCCCCTA CTCTTCCACG CCCCACTGTC GGCCCCCGGC CACGCCTTTC
  S
  GAGCAGGACC CCACAAGGAG GTCGCTCGGA GCCCGGCCCG CCCCTTAAGC GACACCCACC
  TTCCTATTCC CTCGAGGGCT GAGAAGTTGG GGGCCTGGAA TCAGGTCTCG CACGCTGCAC
  GAGCGTGGCC GAGGCGACCT CCCCTCCGCT CCCGTCACAC GCAAACACCT GGAGCCTGGC
  GCCAGCGTGC GCAGCCCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382665844	MGP_WTSI_11_21270958	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs246987854					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382665844	MGP_WTSI_11_21270958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:21320955 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2630	CpG island 2630	within coordinates
Gm12043	predicted gene 12043	within coordinates
Rr246416	regulatory region 246416	within coordinates
Rr402440	regulatory region 402440	182 bp upstream
Tssr3440	transcription start site region 3440	177 bp upstream
Tssr3441	transcription start site region 3441	149 bp upstream
Tssr3442	transcription start site region 3442	37 bp upstream
Tssr100572	transcription start site region 100572	218 bp downstream
Tssr107064	transcription start site region 107064	470 bp upstream
Tssr107065	transcription start site region 107065	372 bp upstream
Tssr107066	transcription start site region 107066	299 bp upstream
Tssr107067	transcription start site region 107067	282 bp upstream
Tssr107068	transcription start site region 107068	266 bp upstream
Tssr107069	transcription start site region 107069	188 bp downstream
Tssr107070	transcription start site region 107070	309 bp downstream
Ugp2	UDP-glucose pyrophosphorylase 2	within coordinates