rs247001067 SNP Detail

Summary

• ID
  rs247001067
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:59736597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    actgaagat aacgacagtg tactcatata
  tataaaataa atcttttctt taaaaaaaaa TCACATAGGT ACATGTGCAG ATTTTAAAAG
  TCTGGAAATC AAATAAAATA GCAGTAGTCC ACTTAGTCCA ACAAGCAAGA AAAAAACTTC
  M
  TCAGATTTAA TAATGCTTTG CATCTTGGGA TGCAGCCTAG CCAAAAGGGT AATTGGAAGG
  TTTCTCTATT TAATTTCCAT CAACTTCTTA ACAAACATAC TAGAAGCAAA CACTATGTAC
  AGTTGAGAAA AGTATATATA TTATACCCGA                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319739024	CHEV_1_59754282	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247001067					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:59736597 () rs orientation: forward

Symbol	Name	Function Class
Nop58	NOP58 ribonucleoprotein	Intron
Rr371359	regulatory region 371359	within coordinates
Rr411703	regulatory region 411703	224 bp proximal
Tssr6887	transcription start site region 6887	622 bp upstream
Tssr11836	transcription start site region 11836	307 bp downstream