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rs247006954 SNP Detail
Summary
  • ID
    rs247006954
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:8059955 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATACCTGCTT TTGGCAAACT
GCATAGCATC CTTAAGATCC AATCTCCTCT CTTTATATTA GATGCTAATG CCAACATACA
GAATGTAACA ACTTCAGGGA ACAAAGCAGA GATTGTGGCT TCTGTCACTG CTAAAGGAGA
GTCCCAATTT GAAGCTCTCA ATTTTGATTT TCAAGCACAA GCTCAATTCC TGGAGTTAAA
Y
CCTCATCCTC CAGTCCTGAA GGAATCCATG AACTTCTCCA GTAAGCATGT GAGAATGGAG
CATGAGGGTG AGATAGTATT TGATGGAAAG GCCATTGAGG GGAAATCAGA CACAGTCGCA
AGTTTACACA CAGAGAAAAA TGAAGTAGAG TTTAATAATG GTATGACTGT CAAAGTAAAC
AATCAGCTCA CCCTTGACAG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385064699 MGP_WTSI_12_8016761 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247006954 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385064699 MGP_WTSI_12_8016761 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:8059955 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apob apolipoprotein B within coordinates
Tssr3782 transcription start site region 3782 1243 bp downstream
Tssr112642 transcription start site region 112642 1968 bp downstream
Tssr112643 transcription start site region 112643 1879 bp downstream
Tssr112644 transcription start site region 112644 1665 bp downstream
Tssr112645 transcription start site region 112645 1563 bp downstream
Tssr112646 transcription start site region 112646 1534 bp downstream
Tssr112647 transcription start site region 112647 1362 bp downstream
Tssr112648 transcription start site region 112648 1340 bp downstream
Tssr112649 transcription start site region 112649 858 bp downstream
Tssr112650 transcription start site region 112650 778 bp downstream
Tssr112651 transcription start site region 112651 726 bp downstream
Tssr112652 transcription start site region 112652 696 bp downstream
Tssr112653 transcription start site region 112653 677 bp downstream
Tssr112654 transcription start site region 112654 663 bp downstream
Tssr112655 transcription start site region 112655 640 bp downstream
Tssr112656 transcription start site region 112656 620 bp downstream
Tssr112657 transcription start site region 112657 606 bp downstream
Tssr112658 transcription start site region 112658 573 bp downstream
Tssr112659 transcription start site region 112659 494 bp downstream
Tssr112660 transcription start site region 112660 370 bp downstream
Tssr112661 transcription start site region 112661 135 bp downstream
Tssr112662 transcription start site region 112662 96 bp upstream
Tssr112663 transcription start site region 112663 331 bp upstream
Tssr112664 transcription start site region 112664 356 bp upstream
Tssr112665 transcription start site region 112665 521 bp upstream
Tssr112666 transcription start site region 112666 530 bp upstream
Tssr112667 transcription start site region 112667 577 bp upstream
Tssr112668 transcription start site region 112668 715 bp upstream
Tssr112669 transcription start site region 112669 800 bp upstream
Tssr112670 transcription start site region 112670 853 bp upstream
Tssr112671 transcription start site region 112671 968 bp upstream
Tssr112672 transcription start site region 112672 1547 bp upstream
Tssr112673 transcription start site region 112673 1590 bp upstream
Tssr112674 transcription start site region 112674 1691 bp upstream
Tssr112675 transcription start site region 112675 1718 bp upstream
Tssr112676 transcription start site region 112676 1821 bp upstream
Tssr112677 transcription start site region 112677 1971 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory