rs247010136 SNP Detail

Summary

• ID
  rs247010136
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96142356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTAACAG CTTGATTGAG
  CTGATCATTT CAAGTATACC CTTGAAGTCT ATATTATGGT TACAATTCAT ATTCTGTGAA
  GCACATATCT TGTTTTTTTA AACATTATTC TTTTTGCTTT AATAAGGAAA TAAATAATTT
  TTTAGCTGTA ACATTTTAAT GGCTATGACA ATATTTTAAG TAAAGAAGTC TAAGGAACTC
  R
  GTGTGGGGAG GGAGGGGGAG TTGGAGAGGG GCAGAGCCTT CCTTTCAGTG AGGAAAGCCC
  TGATGAGGAA AATGAAGCAA CAGATGTTTC TTCTGTTACA ATTGAAGTTG TTTCATTCAA
  AATTCAACAG TAGCTGAAAT GAGGAGAGAG AGGGGGGTCA TAAATCCGAC CTAAATGGTG
  AATAAATAAA ACAGCCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss378570994	MGP_WTSI_9_96160722	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs247010136					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378570994	MGP_WTSI_9_96160722	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96142356 () rs orientation: forward

Symbol	Name	Function Class
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1069 bp downstream
Tssr86589	transcription start site region 86589	1592 bp downstream
Tssr86590	transcription start site region 86590	1577 bp downstream
Tssr86591	transcription start site region 86591	1518 bp downstream
Tssr86592	transcription start site region 86592	1501 bp downstream
Tssr86593	transcription start site region 86593	1473 bp downstream
Tssr86594	transcription start site region 86594	1290 bp downstream
Tssr86595	transcription start site region 86595	1042 bp downstream
Tssr86596	transcription start site region 86596	1026 bp downstream