rs247015018 SNP Detail

Summary

• ID
  rs247015018
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101166455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCCTCA GCACCCTCTG
  CCTCAGCACC CTCTGCCCCA GCACCCTCTG CCCCAGCACC CTCTGCCTCA GCACCCTCTG
  CCTCAGCACC CTCTGCCTCA GCACCCTCTG CCTCAGCACC CTCTGCCTCA GCACCCTCTG
  CCTCAGTGTT CCTGTGTGAC CTGTCTTTTC AACTAGAAAG TCTAGAACTG TACAGACCCC
  R
  GAGTTGGAGG TGGAAAGGGA CACTAGGTCC TGGAGCCTCC TCTGTGGGCT TTTTTGACCA
  GATGAGAACG TAAGGGCCTC CTCCAGCTAC CCCTGGTCAT TCAGGTGCTT CAGGTTTGTG
  ACCTTTGCTG AGACCCTGGA TGCTGCAGCA AACAGACATC TGCTTTAGCA GAGGGACAGC
  TTGTCTCTGT GCATCCGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395192960	MGP_WTSI_15_101099005	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247015018					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395192960	MGP_WTSI_15_101099005	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101166455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7777	CpG island 7777	1326 bp distal
Gm63176	predicted gene, 63176	1906 bp upstream
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr370021	regulatory region 370021	614 bp downstream
Rr510000	regulatory region 510000	1718 bp distal
Rr510001	regulatory region 510001	1859 bp distal
Rr510002	regulatory region 510002	2 bp distal
Rr510003	regulatory region 510003	1366 bp distal
Tssr133214	transcription start site region 133214	1715 bp downstream
Tssr133215	transcription start site region 133215	1462 bp downstream
Tssr133216	transcription start site region 133216	1431 bp downstream
Tssr133217	transcription start site region 133217	1328 bp downstream
Tssr133218	transcription start site region 133218	700 bp downstream
Tssr133219	transcription start site region 133219	678 bp downstream
Tssr133220	transcription start site region 133220	583 bp downstream
Tssr133221	transcription start site region 133221	523 bp downstream
Tssr133222	transcription start site region 133222	813 bp upstream
Tssr133223	transcription start site region 133223	1502 bp upstream
Tssr133224	transcription start site region 133224	1545 bp upstream
Tssr133225	transcription start site region 133225	1556 bp upstream
Tssr133226	transcription start site region 133226	1577 bp upstream
Tssr133227	transcription start site region 133227	1585 bp upstream
Tssr133228	transcription start site region 133228	1603 bp upstream
Tssr133229	transcription start site region 133229	1614 bp upstream
Tssr133230	transcription start site region 133230	1692 bp upstream
Tssr133231	transcription start site region 133231	1724 bp upstream
Tssr133232	transcription start site region 133232	1743 bp upstream
Tssr133233	transcription start site region 133233	1771 bp upstream
Tssr133234	transcription start site region 133234	1789 bp upstream
Tssr133235	transcription start site region 133235	1822 bp upstream
Tssr133236	transcription start site region 133236	1871 bp upstream
Tssr133237	transcription start site region 133237	1893 bp upstream
Tssr133238	transcription start site region 133238	1926 bp upstream
Tssr133239	transcription start site region 133239	1968 bp upstream
Tssr136545	transcription start site region 136545	1725 bp downstream
Tssr136546	transcription start site region 136546	1847 bp downstream
Tssr136547	transcription start site region 136547	1923 bp downstream
Tssr136548	transcription start site region 136548	1933 bp downstream
Tssr136549	transcription start site region 136549	1967 bp downstream