rs247025099 SNP Detail

Summary

• ID
  rs247025099
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94005955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCTCTC TCTCTACTCT
  TAGCCCCATC CTTTCAGAAA TATCTTTTCA GTACATAGCC CTATCAAAAA AAAAAAAAAA
  AAAAAAAAAA AAAAAAGCAG AGCAAATGCT AATGCTAAAA GTATTAGGCA GTAATAATTA
  ATTAATTTTA AAAAAACAGC TGAGAAAATA AGTTCTAAAA CCCAAACCTA GAATCATTTA
  M
  AAAAGAAAAA AGAAAAGACT TGGAAAGGCG GGGTAAATAA AGAAAACCAT AACTAGTAGT
  CTATTGATAA CCAGTAGTCT ATTGATCCAA TGTAAGCATA CTGTTAAAGA TTTGCTCAAA
  TGTGCATACA TATGCACGTA TGTGTATACA ACACATATAT ACATGTATTA TATATCTGCA
  AGTCTGGATT TTACATGTAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321864587	CHEV_6_93978968	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247025099					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94005955 () rs orientation: forward

Symbol	Name	Function Class
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	within coordinates
Tssr62166	transcription start site region 62166	135 bp upstream