rs247043506 SNP Detail

Summary

• ID
  rs247043506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:6135307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCTATAA AATCTACTTC
  CGCATGTCAA CATGAACTAC ACAGACCAAC CTTGTAACCA GTGTCAATAT ACTAGAAAAT
  TTGCGTTCGC CTTTGCAAAG CATTTTAAAA CGCTGCTGTA GGCAAAAAAA AAAAAAAAAA
  AAAAAGGGGG GGGGGAGGGG GAAACTGCAC CCGCCTCAGA AACTGAAGGG CGTGCCTTTC
  Y
  CCCTAATGAC CACCTTGTGG CCATTCAGTC TGCGAGGGTC TGCAATAACT TAAGACACAA
  CGTGTCAAGG GCAGCCTTTC CGGAAAGACA AAACAAGCGC TCCAGACCGG AGGCAAGCAA
  GCGGCACGTT GGCAGCAGGG TCTGTTGTCT GTGATTCAAG GGCTCGGAAG AGATACCCCT
  CAGCAGAACC GGGGGCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325520322	CHEV_18_6135305	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247043506					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:6135307 () rs orientation: forward

Symbol	Name	Function Class
Arhgap12	Rho GTPase activating protein 12	within coordinates
Cpgi9676	CpG island 9676	within coordinates
Gm58680	predicted gene, 58680	909 bp upstream
Rr405549	regulatory region 405549	629 bp upstream
Rr533476	regulatory region 533476	within coordinates
Rr533477	regulatory region 533477	571 bp proximal
Rr533478	regulatory region 533478	920 bp proximal
Rr533479	regulatory region 533479	1983 bp proximal
Tssr149959	transcription start site region 149959	1113 bp upstream
Tssr152338	transcription start site region 152338	77 bp upstream
Tssr152339	transcription start site region 152339	552 bp downstream
Tssr152340	transcription start site region 152340	589 bp downstream
Tssr152341	transcription start site region 152341	750 bp downstream