rs247045607 SNP Detail

Summary

• ID
  rs247045607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69817194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACAAA GACACAGACA
  CACACACACA AAGACACAGA CACACACACA CACAGACAGA GACACACACA CACAGATACA
  CACACACACA CACACACACA CACACACACA CACACACACA CACACACGAA TGCACGAGTG
  TCATTGCCTC TTTGTAGTGC CCGTTCTTGC TTTGTGACCA ATAACTACCA TTAGTGTCTG
  Y
  TTTATTATTG TTTAATGATT TCTAACATTG GCACTTAGCA TCTTTTTTTT TCCAAATAAT
  ATTTGATAGT TGCTACTTTC CTTGTTCTTA TGGAAAAACA CGGGACGAAA AGCAGTGTAC
  AGGAAGAAGG ATTTATTTTG GCTTGCGGTT TGAAGGGATC CAGTCCACAG TGGCAGGAGT
  ATGATATAGC TGACACCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085546	CHEV_12_70871407	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247045607					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69817194 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Tssr116525	transcription start site region 116525	1113 bp upstream
Tssr116526	transcription start site region 116526	678 bp upstream