rs247046577 SNP Detail

Summary

• ID
  rs247046577
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88199168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCAGCTCTG CCGACGCCTC
  CCGGGCCACT ACGCCTCTCC CTCGCACTCC AGAACAAATG TCCCCGCGTG CCGTGTGCCC
  GAAGCCCCGC CCGGGCCTCA GGGGTGCCGC GGCCGCCCAG CCGCACTTGG ATGCATAGCC
  TCTGCTGCCT GGTCCCCGCT GTTGCCGCCG CCTCCTGTCC GCACTCGCCG CTGCTGCTGC
  S
  GCCGCCGCTC TGAATTATTG ATGCAGCGGG CGCTGCAGCC GGAGCGGGCG GAGAGCGCGC
  GCCGGGCACA AAGGCGCGGA TCAAGCCTGG CCCCGCCCCC GCCCCTCCCA GCCAGCCTCT
  CTGAGCGGCC CCGCCCCTCC TCTGCCGAAG CCCCACCCTC CAGCCAATCG CGACGCACCG
  CGCTCCCCGC CGAGCCAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375466012	MGP_WTSI_8_89996439	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247046577					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375466012	MGP_WTSI_8_89996439	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88199168 () rs orientation: forward

Symbol	Name	Function Class
Cbln1	cerebellin 1 precursor protein	within coordinates
Cbln1os	cerebellin 1 precursor protein opposite strand	272 bp upstream
Cpgi20771	CpG island 20771	1272 bp distal
Cpgi20772	CpG island 20772	within coordinates
Rr666962	regulatory region 666962	within coordinates
Rr666963	regulatory region 666963	18 bp distal
Rr666964	regulatory region 666964	414 bp proximal
Rr666965	regulatory region 666965	500 bp proximal
Rr666966	regulatory region 666966	788 bp proximal
Rr666967	regulatory region 666967	1730 bp proximal
Tssr2634	transcription start site region 2634	11 bp upstream
Tssr78595	transcription start site region 78595	231 bp upstream
Tssr78596	transcription start site region 78596	243 bp upstream
Tssr78597	transcription start site region 78597	265 bp upstream
Tssr78598	transcription start site region 78598	298 bp upstream
Tssr78599	transcription start site region 78599	326 bp upstream
Tssr78600	transcription start site region 78600	349 bp upstream
Tssr78601	transcription start site region 78601	356 bp upstream
Tssr78602	transcription start site region 78602	613 bp upstream
Tssr78603	transcription start site region 78603	710 bp upstream
Tssr78604	transcription start site region 78604	839 bp upstream
Tssr78605	transcription start site region 78605	867 bp upstream
Tssr82312	transcription start site region 82312	1889 bp upstream
Tssr82313	transcription start site region 82313	1863 bp upstream
Tssr82314	transcription start site region 82314	407 bp upstream
Tssr82315	transcription start site region 82315	344 bp upstream
Tssr82316	transcription start site region 82316	279 bp upstream
Tssr82317	transcription start site region 82317	159 bp upstream
Tssr82318	transcription start site region 82318	3 bp downstream
Tssr82319	transcription start site region 82319	36 bp downstream
Tssr82320	transcription start site region 82320	63 bp downstream
Tssr82321	transcription start site region 82321	75 bp downstream