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rs247047290 SNP Detail
Summary
  • ID
    rs247047290
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr6:70701785 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATCAGAAGAG GTGTGACTCT
TATTCTAAAA TTTGTCACAA AATGTCAAAA TGAGAGACTC TGTAGGAACG AGTCCTTGAC
AGACAGCTCA AGGGGTTTTT TTCCTTTGTC TCATTTCTAC ATGAAAGTAA ATTTGAAATG
ATCTTTTTTA TTATAAGAGT AGAAATACAG TTGGGTTTGA ACTATATGTT TTAATGGCCA
M
GGTTTTGTAA GACATTTGGT CCTTTGTTTT CCCAGTTATT ACTCGATTGT AATTTTATAT
CGCCAGCAAT GGACTGAAAC GGTCCGCAAC CTCTTCTTTA CAACTGGGTG ACCTCGCGGC
TGTGCCAGCC ATTTGGCGTT CACCCTGCCG CTAAGGGCCA TGTGAACCCC CGCGGTAGCA
TCCCTTGCTC CGCGTGGACC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368707582 MGP_WTSI_6_70674795 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247047290 SNP C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss368707582 MGP_WTSI_6_70674795 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:70701785 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm68839 predicted gene, 68839 1645 bp downstream
Igk immunoglobulin kappa chain complex within coordinates
Igkc immunoglobulin kappa constant 1634 bp upstream
Igkj2 immunoglobulin kappa joining 2 1847 bp downstream
Igkj3 immunoglobulin kappa joining 3 1541 bp downstream
Igkj4 immunoglobulin kappa joining 4 1216 bp downstream
Igkj5 immunoglobulin kappa joining 5 878 bp downstream
Rr158 regulatory region 158 1150 bp proximal
Rr150202 regulatory region 150202 within coordinates
Rr399684 regulatory region 399684 334 bp upstream
Rr399685 regulatory region 399685 746 bp upstream
Rr399686 regulatory region 399686 1710 bp upstream
Tssr56952 transcription start site region 56952 1950 bp downstream
Tssr56953 transcription start site region 56953 1254 bp downstream
Tssr56954 transcription start site region 56954 1122 bp downstream
Tssr56955 transcription start site region 56955 901 bp downstream
Tssr56956 transcription start site region 56956 1007 bp upstream
Tssr56957 transcription start site region 56957 1629 bp upstream
Tssr56958 transcription start site region 56958 1676 bp upstream
Tssr56959 transcription start site region 56959 1694 bp upstream
Tssr56960 transcription start site region 56960 1717 bp upstream
Tssr56961 transcription start site region 56961 1731 bp upstream
Tssr56962 transcription start site region 56962 1739 bp upstream
Tssr56963 transcription start site region 56963 1788 bp upstream
Tssr56964 transcription start site region 56964 1803 bp upstream
Tssr56965 transcription start site region 56965 1809 bp upstream
Tssr56966 transcription start site region 56966 1820 bp upstream
Tssr56967 transcription start site region 56967 1835 bp upstream
Tssr56968 transcription start site region 56968 1859 bp upstream
Tssr56969 transcription start site region 56969 1895 bp upstream
Tssr56970 transcription start site region 56970 1908 bp upstream
Tssr56971 transcription start site region 56971 1928 bp upstream
Tssr56972 transcription start site region 56972 1954 bp upstream
Tssr56973 transcription start site region 56973 1992 bp upstream
Tssr61321 transcription start site region 61321 1681 bp downstream
Tssr61322 transcription start site region 61322 1846 bp downstream
Tssr61323 transcription start site region 61323 1861 bp downstream
Tssr61324 transcription start site region 61324 1951 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory