rs247050008 SNP Detail

Summary

• ID
  rs247050008
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150869974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGAAACTG GGTATCAATA AAACATTGAC
  GTCCAATAGA AAGAGCAGtg tttgtctgtc tgtctgtctg tctgtttgtt tgtttgtttg
  tttTTAAAGA AAGAAAAGAA Aaggggaggg gaggggaagg gaggggagAA AAAATTCTGG
  R
  GGAGTTGAAA TTTCGTTATC AAGATTCACT TTGCTGATCA GCCTAAATCC TCTGCGAAGC
  ATGGTGATGC GATAGTATTC CCATTTCACA TACCCTCCAG TACAACTATG TGTCACGTCT
  CAGGCAAAGA TCCACTGAAA TGTTGTTCCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320052981	CHEV_1_152841353	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247050008					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150869974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	430 bp distal
Gm29188	predicted gene 29188	within coordinates
Hmcn1	hemicentin 1	788 bp upstream
Rr420192	regulatory region 420192	1584 bp distal
Rr420193	regulatory region 420193	682 bp distal
Rr420194	regulatory region 420194	343 bp distal
Rr420195	regulatory region 420195	229 bp distal
Rr420196	regulatory region 420196	280 bp proximal
Tssr14167	transcription start site region 14167	1068 bp upstream
Tssr14168	transcription start site region 14168	774 bp upstream