rs247055771 SNP Detail

Summary

• ID
  rs247055771
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101168688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACAGAGC AGTTGCCTAA
  GGCTTCTTCA GGGCCTCCGC CACCTCCAAC CTTCTTCTCC TTCAGTCCTC CCACTGGCCC
  CAGCCCCAGC CTGGCCCAGA GTTCTCTGAA ATTGTTCCCA CCACCAGCCA CCCACCAGCT
  TGGGGAGGGG GAGAGCTATT CCATGCCAGC AGCTTTCCCC GGCTTGGCAC CCACCTCTCC
  S
  AACCGTGACA CTTCCGGCAT TCTGGACGCA CCCGTGACCT CCACCAAGTC CCGGAGCGGG
  GCTTCAGGTG GCAGCGAGGG CCGCTGTGCA GTCTGTGGTG ACAATGCTTC GTGTCAGCAC
  TATGGGGTCC GCACCTGTGA GGGCTGCAAG GGCTTCTTCA AGGTATTTTG TTGGTTCTGG
  GGGACGATGA TATCATGTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395192997	MGP_WTSI_15_101101238	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247055771					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395192997	MGP_WTSI_15_101101238	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101168688 () rs orientation: forward

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Tssr133222	transcription start site region 133222	1391 bp downstream
Tssr133223	transcription start site region 133223	701 bp downstream
Tssr133224	transcription start site region 133224	683 bp downstream
Tssr133225	transcription start site region 133225	667 bp downstream
Tssr133226	transcription start site region 133226	649 bp downstream
Tssr133227	transcription start site region 133227	636 bp downstream
Tssr133228	transcription start site region 133228	620 bp downstream
Tssr133229	transcription start site region 133229	582 bp downstream
Tssr133230	transcription start site region 133230	523 bp downstream
Tssr133231	transcription start site region 133231	497 bp downstream
Tssr133232	transcription start site region 133232	470 bp downstream
Tssr133233	transcription start site region 133233	449 bp downstream
Tssr133234	transcription start site region 133234	423 bp downstream
Tssr133235	transcription start site region 133235	381 bp downstream
Tssr133236	transcription start site region 133236	342 bp downstream
Tssr133237	transcription start site region 133237	311 bp downstream
Tssr133238	transcription start site region 133238	293 bp downstream
Tssr133239	transcription start site region 133239	230 bp downstream
Tssr133240	transcription start site region 133240	162 bp downstream
Tssr133241	transcription start site region 133241	153 bp downstream
Tssr133242	transcription start site region 133242	141 bp downstream
Tssr133243	transcription start site region 133243	120 bp downstream
Tssr133244	transcription start site region 133244	90 bp downstream
Tssr133245	transcription start site region 133245	44 bp downstream
Tssr133246	transcription start site region 133246	14 bp downstream
Tssr133247	transcription start site region 133247	56 bp upstream
Tssr133248	transcription start site region 133248	76 bp upstream
Tssr133249	transcription start site region 133249	927 bp upstream
Tssr133250	transcription start site region 133250	961 bp upstream
Tssr133251	transcription start site region 133251	992 bp upstream
Tssr133252	transcription start site region 133252	1339 bp upstream
Tssr133253	transcription start site region 133253	1350 bp upstream
Tssr133254	transcription start site region 133254	1370 bp upstream
Tssr133255	transcription start site region 133255	1403 bp upstream
Tssr133256	transcription start site region 133256	1444 bp upstream
Tssr133257	transcription start site region 133257	1462 bp upstream
Tssr133258	transcription start site region 133258	1914 bp upstream
Tssr133259	transcription start site region 133259	1931 bp upstream
Tssr133260	transcription start site region 133260	1949 bp upstream
Tssr133261	transcription start site region 133261	1959 bp upstream
Tssr133262	transcription start site region 133262	1970 bp upstream
Tssr133263	transcription start site region 133263	1991 bp upstream
Tssr136545	transcription start site region 136545	497 bp upstream
Tssr136546	transcription start site region 136546	376 bp upstream
Tssr136547	transcription start site region 136547	301 bp upstream
Tssr136548	transcription start site region 136548	284 bp upstream
Tssr136549	transcription start site region 136549	259 bp upstream
Tssr136550	transcription start site region 136550	143 bp upstream
Tssr136551	transcription start site region 136551	38 bp upstream