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rs247067690 SNP Detail
Summary
  • ID
    rs247067690
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr17:84492680 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCAGAGGAA ATGGTTCTAA
    GCTAAACACC CACACTACGT GGTGGCAATG AGCCCGTTAT CAAACTTTGG AATGCAAGGG
    CTTCCCCACC CCCAGACATA CAGAACTTTG TCTAAAAAAC AAAAACAAGG TAAACAACCA
    CCACAAAGGA GGCTGAGAGC GAGCGACTCG AATCAAGGCA TGTTCCTGGC ATTATTTTGA
    R
    TTCTAGAAGC TTATAGTTTA GGGAGGTGGC AGCCGGCTGG CTCACACTGG TCTTGGAACC
    CCTTCCAAGA GTTCTCACAT CTGGACTGTT TCTAAGGCTT TCGAGTGAAA GAAGAGATGG
    AATGGTGGTT GGTAGCTGCT GGTGCTGGGC TGATTTTTTT CTTCTAAAAC TAGAGTTTCA
    AACTCATCTG AGACCTAAGT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
ZALENDE/EiJ
ss399282265 MGP_WTSI_17_84584592 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
ZALENDE/EiJ
rs247067690 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss399282265 MGP_WTSI_17_84584592 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84492680 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 346 bp proximal
Rr1582 regulatory region 1582 1452 bp downstream
Rr340271 regulatory region 340271 within coordinates
Tssr146043 transcription start site region 146043 1480 bp downstream
Tssr146044 transcription start site region 146044 494 bp upstream
Tssr146045 transcription start site region 146045 1838 bp upstream
Tssr149649 transcription start site region 149649 1660 bp upstream
Tssr149650 transcription start site region 149650 312 bp downstream
Tssr149651 transcription start site region 149651 350 bp downstream
Tssr149652 transcription start site region 149652 735 bp downstream
Tssr149653 transcription start site region 149653 783 bp downstream
Tssr149654 transcription start site region 149654 923 bp downstream
Tssr149655 transcription start site region 149655 1019 bp downstream
Tssr149656 transcription start site region 149656 1109 bp downstream
Tssr149657 transcription start site region 149657 1325 bp downstream
Tssr149658 transcription start site region 149658 1382 bp downstream
Tssr149659 transcription start site region 149659 1417 bp downstream
Tssr149660 transcription start site region 149660 1448 bp downstream
Tssr149661 transcription start site region 149661 1497 bp downstream
Tssr149662 transcription start site region 149662 1556 bp downstream
Tssr149663 transcription start site region 149663 1620 bp downstream
Tssr149664 transcription start site region 149664 1661 bp downstream
Tssr149665 transcription start site region 149665 1706 bp downstream
Tssr149666 transcription start site region 149666 1775 bp downstream
Tssr149667 transcription start site region 149667 1864 bp downstream
Tssr149668 transcription start site region 149668 1919 bp downstream
Tssr149669 transcription start site region 149669 1952 bp downstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory