rs247067690 SNP Detail

Summary

• ID
  rs247067690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84492680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAGGAA ATGGTTCTAA
  GCTAAACACC CACACTACGT GGTGGCAATG AGCCCGTTAT CAAACTTTGG AATGCAAGGG
  CTTCCCCACC CCCAGACATA CAGAACTTTG TCTAAAAAAC AAAAACAAGG TAAACAACCA
  CCACAAAGGA GGCTGAGAGC GAGCGACTCG AATCAAGGCA TGTTCCTGGC ATTATTTTGA
  R
  TTCTAGAAGC TTATAGTTTA GGGAGGTGGC AGCCGGCTGG CTCACACTGG TCTTGGAACC
  CCTTCCAAGA GTTCTCACAT CTGGACTGTT TCTAAGGCTT TCGAGTGAAA GAAGAGATGG
  AATGGTGGTT GGTAGCTGCT GGTGCTGGGC TGATTTTTTT CTTCTAAAAC TAGAGTTTCA
  AACTCATCTG AGACCTAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss399282265	MGP_WTSI_17_84584592	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs247067690					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399282265	MGP_WTSI_17_84584592	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84492680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	346 bp proximal
Rr1582	regulatory region 1582	1452 bp downstream
Rr340271	regulatory region 340271	within coordinates
Tssr146043	transcription start site region 146043	1480 bp downstream
Tssr146044	transcription start site region 146044	494 bp upstream
Tssr146045	transcription start site region 146045	1838 bp upstream
Tssr149649	transcription start site region 149649	1660 bp upstream
Tssr149650	transcription start site region 149650	312 bp downstream
Tssr149651	transcription start site region 149651	350 bp downstream
Tssr149652	transcription start site region 149652	735 bp downstream
Tssr149653	transcription start site region 149653	783 bp downstream
Tssr149654	transcription start site region 149654	923 bp downstream
Tssr149655	transcription start site region 149655	1019 bp downstream
Tssr149656	transcription start site region 149656	1109 bp downstream
Tssr149657	transcription start site region 149657	1325 bp downstream
Tssr149658	transcription start site region 149658	1382 bp downstream
Tssr149659	transcription start site region 149659	1417 bp downstream
Tssr149660	transcription start site region 149660	1448 bp downstream
Tssr149661	transcription start site region 149661	1497 bp downstream
Tssr149662	transcription start site region 149662	1556 bp downstream
Tssr149663	transcription start site region 149663	1620 bp downstream
Tssr149664	transcription start site region 149664	1661 bp downstream
Tssr149665	transcription start site region 149665	1706 bp downstream
Tssr149666	transcription start site region 149666	1775 bp downstream
Tssr149667	transcription start site region 149667	1864 bp downstream
Tssr149668	transcription start site region 149668	1919 bp downstream
Tssr149669	transcription start site region 149669	1952 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates