rs247087058 SNP Detail

Summary

• ID
  rs247087058
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:60744612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTTGT TTTGGTTTTT
  TTTTTTTTTT TTTTTTGTTT CAGTTTTTTT TTCTCTATGA ATAAATGTCA CTTTTTGAGG
  CAAAAAGAAG GAACCGTGAA CATTTTAGAC ACCCTTTTCT TTGGGGTAGG CTCTGCCCCA
  GGCGCCGTCT CCTTCTCCCC CAAACACTAA TGCATTTCCC TAACCTAGTC ACCTCATTCC
  T
  AAAGGCTTTC CTACCCCAGC CAAATCTCCA AAAGTGAGTC AAGGGGCTAA AAAACAAGGC
  TGGCCTCATT TGCTGGACCA AATCTACAGG GAGAACCCCT GAGTGAGGTT GTCCAGGGAA
  TTGTCCCCCG GTGAGGGGAG CAGGGGAGAG AAAATGGTAG CCATTTTTAC ATTGTTTTGT
  ATAGTATTTA TTGATTCAGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss349811561	MGP_WTSI_1_60762297	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs247087058					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349811561	MGP_WTSI_1_60762297	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:60744612 () rs orientation: forward

Symbol	Name	Function Class
D1Mit126	DNA segment, Chr 1, Massachusetts Institute of Technology 126	1719 bp distal
Eif4a-ps4	eukaryotic translation initiation factor 4A, pseudogene 4	304 bp downstream
Gm57147	predicted gene, 57147	115 bp downstream
Gm57165	predicted gene, 57165	within coordinates
Tssr6932	transcription start site region 6932	1533 bp downstream
Tssr6933	transcription start site region 6933	1439 bp downstream
Tssr6934	transcription start site region 6934	453 bp downstream
Tssr6935	transcription start site region 6935	204 bp downstream
Tssr6936	transcription start site region 6936	158 bp downstream