rs247099590 SNP Detail

Summary

• ID
  rs247099590
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:150871544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tgtaatttc atcatgaatg ttacagtttc
  catttgtctc caggagtgca atttgaatca ttttaaaaac tttgttgtct cactttgaat
  ctataaccac actaattcag gtacagtagt tggtgatctc ttggtaatct gtctcagtac
  W
  tgggttgctg tagaggaatt ttgatctagc aacatggctg cactggcaag ggatcacatc
  caaagacctt ctagagatct atgatctggc cagaatgcag acatacctag attgcagttt
  gatctggctg gaaaacagac atgcccttaa                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320053004	CHEV_1_152842923	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247099590					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:150871544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi846	CpG island 846	2000 bp distal
Gm29188	predicted gene 29188	within coordinates
Rr420194	regulatory region 420194	1913 bp distal
Rr420195	regulatory region 420195	1799 bp distal
Rr420196	regulatory region 420196	757 bp distal