rs247100914 SNP Detail

Summary

• ID
  rs247100914
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148892972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTTGCCAT TTCCTCGTCT
  TCACGGGCGG CTGGGTTGCC CATCTGCTTT TCCCACCATG GATGGAACGG ACACAAATGT
  CTCACCCACA GTCAACAAAA CCAACAAGAT ATCCTCGAAC ATCACAGTAC ACGTCTTCTT
  TGGCTTGGCT GGTTGGTTGT CCTTTTTCGT TTTGGGTTCG GGAGGGTTTT TTTTTTTTTT
  K
  TTTGTTTGTT TGTCTTTCAG GCAAGGTCTC CCACGTGTAG CCCAGGCTGG CCTTGTACTT
  CCGCTCCTCT TGTCTCAGCT TCCCCAGGGC TGGGATCATA GGGCATGTGT CGCCATGTCC
  AATCTGAACT TCCTTTATTT GCAAATCATG CGCAAAGAGA AACAGAGCAG ACTCGGCAGC
  AGCAGCAGGG GTAATGTTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SM/J	ST/bJ	WSB/EiJ
ss367143046	MGP_WTSI_5_149767738	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	T	G	T	G	T	G	G	G	G	G	G	G	G	G	T	G	G	T	T	G	G	T	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SM/J	ST/bJ	WSB/EiJ
rs247100914					SNP	G	G	T	T	G	T	G	T	G	G	G	G	G	G	G	G	G	T	G	G	T	T	G	G	T	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367143046	MGP_WTSI_5_149767738	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148892972 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	within coordinates
Gm52833	predicted gene, 52833	within coordinates
Rr378799	regulatory region 378799	601 bp upstream
Rr625340	regulatory region 625340	1534 bp distal
Rr625341	regulatory region 625341	1429 bp distal
Rr625342	regulatory region 625342	8 bp proximal
Rr625343	regulatory region 625343	643 bp proximal
Tssr54595	transcription start site region 54595	400 bp upstream