rs247102573 SNP Detail

Summary

• ID
  rs247102573
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66210320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAACCGC ATCAGGTAGA
  AAACAGCAGA GGTGTGGGAA ATGGCACTTG ACACAGGATA AGTAAGTGGT ACCACCGTGA
  CATGATGTGT CATTGCCTTC GTCACCTGGG GCCGTGTCAT GGCTATGGTC TCCATGGTGA
  ATGCAGCTCT TCATTTATCG TCCCGTCTCC ATGGTGTCTG GTGCTATCCT GTCACCTGAC
  M
  CTGTGCGTTG TAGCAAAGAA GTGCCAGGAT TGGGTTAACC TGAGCTTCAC AGAGATAATT
  TCCAAAAGAG CACTTTTATT ACACCTTGAT GCTTAGGAGG TTGTTTTGTT TTGTTTTCTG
  TTTTCCTTGA AATATTCTCT GTGGCTGTTG GCTCTCCAGG GTGGCATGGT GGGGTCAGTC
  ATAGTATGGC TGCCCCTCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367361	MGP_WTSI_14_66591708	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247102573					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367361	MGP_WTSI_14_66591708	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66210320 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Rr494179	regulatory region 494179	1534 bp distal
Tssr126256	transcription start site region 126256	1968 bp downstream
Tssr126257	transcription start site region 126257	1797 bp downstream
Tssr126258	transcription start site region 126258	1718 bp downstream
Tssr126259	transcription start site region 126259	1689 bp downstream
Tssr126260	transcription start site region 126260	1080 bp downstream
Tssr126261	transcription start site region 126261	1063 bp downstream
Tssr126262	transcription start site region 126262	1036 bp downstream
Tssr126263	transcription start site region 126263	445 bp upstream
Tssr126264	transcription start site region 126264	465 bp upstream
Tssr126265	transcription start site region 126265	506 bp upstream
Tssr126266	transcription start site region 126266	550 bp upstream
Tssr126267	transcription start site region 126267	1382 bp upstream
Tssr126268	transcription start site region 126268	1966 bp upstream
Tssr129260	transcription start site region 129260	480 bp downstream
Tssr129261	transcription start site region 129261	489 bp downstream
Tssr129262	transcription start site region 129262	529 bp downstream
Tssr129263	transcription start site region 129263	542 bp downstream
Tssr129264	transcription start site region 129264	583 bp downstream
Tssr129265	transcription start site region 129265	1990 bp downstream