rs247106200 SNP Detail

Summary

• ID
  rs247106200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTTTGTC CTGTGAGCAT
  CAGTTTGAAT TGATAGAAGG GTACGACTAG CTCCTTTCAT CTACACACGT AAAAGTCCTT
  CCTTAATGGA TGGTCGCTGT GTGTCCCTAA GAATTAAGTA GATAGAACCA ACTAGCGCTG
  GTGTAAAGCC TGTTATCTAT TAAGATTCAA TACTTTACCC CTGCCCTTTC CATGTCTGTG
  R
  GCTGTAAAGT CTAACTCTTG GTTTTGGTCA AGGTGAGCCT CTAAGGCTTC CCGATGAAGA
  AGAGCTGGGG TTTCCAGTGA GAGGCTTGAA ATTCAGGTGT AGGCTCTCGC TCTTATCCTG
  ACTGAGTTCA GTGAAAAAGC AATAGGTATT GTTCTTGTTT ACAACGTACG CGAAGTCATG
  CCTTGACATT TTTACTCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847503	MGP_WTSI_5_91333777	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247106200					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847503	MGP_WTSI_5_91333777	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052610 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1547 bp upstream
Tssr47224	transcription start site region 47224	1042 bp downstream
Tssr47225	transcription start site region 47225	940 bp downstream
Tssr47226	transcription start site region 47226	871 bp downstream
Tssr47227	transcription start site region 47227	677 bp downstream
Tssr47228	transcription start site region 47228	614 bp downstream
Tssr47229	transcription start site region 47229	593 bp downstream
Tssr47230	transcription start site region 47230	568 bp downstream
Tssr47231	transcription start site region 47231	538 bp downstream
Tssr47232	transcription start site region 47232	391 bp downstream
Tssr47233	transcription start site region 47233	341 bp downstream
Tssr47234	transcription start site region 47234	306 bp downstream
Tssr47235	transcription start site region 47235	437 bp upstream
Tssr47236	transcription start site region 47236	457 bp upstream
Tssr47237	transcription start site region 47237	506 bp upstream
Tssr47238	transcription start site region 47238	512 bp upstream
Tssr47239	transcription start site region 47239	572 bp upstream
Tssr47240	transcription start site region 47240	584 bp upstream
Tssr47241	transcription start site region 47241	599 bp upstream
Tssr47242	transcription start site region 47242	636 bp upstream
Tssr47243	transcription start site region 47243	659 bp upstream
Tssr47244	transcription start site region 47244	693 bp upstream
Tssr47245	transcription start site region 47245	713 bp upstream
Tssr47246	transcription start site region 47246	764 bp upstream
Tssr47247	transcription start site region 47247	808 bp upstream
Tssr47248	transcription start site region 47248	871 bp upstream
Tssr47249	transcription start site region 47249	941 bp upstream
Tssr47250	transcription start site region 47250	1079 bp upstream
Tssr47251	transcription start site region 47251	1143 bp upstream
Tssr47252	transcription start site region 47252	1195 bp upstream
Tssr51810	transcription start site region 51810	1608 bp upstream
Tssr51811	transcription start site region 51811	1554 bp upstream
Tssr51812	transcription start site region 51812	524 bp upstream
Tssr51813	transcription start site region 51813	507 bp upstream
Tssr51814	transcription start site region 51814	456 bp downstream
Tssr51815	transcription start site region 51815	490 bp downstream
Tssr51816	transcription start site region 51816	524 bp downstream