rs247108796 SNP Detail

Summary

• ID
  rs247108796
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:101050043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG TGGAGTCTGT TGGCGGCTTC
  K
  GGAGCCAGAC TGGACTCTGA TCCCG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324139383	CHEV_12_102321994	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247108796					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101050043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4995	CpG island 4995	within coordinates
D130020L05Rik	RIKEN cDNA D130020L05 gene	within coordinates
Ppp4r3a	protein phosphatase 4 regulatory subunit 3A	82 bp upstream
Rr264939	regulatory region 264939	within coordinates
Rr387703	regulatory region 387703	within coordinates
Tssr114723	transcription start site region 114723	811 bp downstream
Tssr114724	transcription start site region 114724	41 bp downstream
Tssr114725	transcription start site region 114725	within coordinates
Tssr114726	transcription start site region 114726	22 bp upstream
Tssr117352	transcription start site region 117352	297 bp upstream
Tssr117353	transcription start site region 117353	173 bp upstream
Tssr117354	transcription start site region 117354	67 bp upstream