rs247115735 SNP Detail

Summary

• ID
  rs247115735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85942951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCCTTGT GCTCGGTTGT
  GCCCGTGGCT GCGACTGGCA GGCGGCCACG CGTGCGCGTG GGCACGCGCG GCGAGGACCC
  ACGTGGGTCA CCCAAACAAA GGCGGCGCCG CGTGATCGGG CGCGCGCGCG CGCACACACC
  GGGCAGGGAG GGCGGGGAGG CGAGGGGGCG GAGCGGGGCG GCGGCTTGCG CAGGCCCGGT
  Y
  GGGGGGCGCG CAGACTCCGC GCAGCAGGAC GTGAGCGCGC GACGCGGCGC CGCCTCCGCG
  CTCGTGGCCG GCACCCGCGG GGCCGCGTAG TCCCCGCTCC CCGGCGCCGC TGGGCTCCCG
  GGAGGGCGGC AGGTGCAGCG CGGCCGGGTG GCCGGCCAGG GGGGCGCCGC GGCGGCGGGT
  GGATGAGAGT TGGCCCCGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss394822175	MGP_WTSI_15_85889180	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs247115735					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394822175	MGP_WTSI_15_85889180	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85942951 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7499	CpG island 7499	within coordinates
Gm41375	predicted gene, 41375	134 bp upstream
Gramd4	GRAM domain containing 4	within coordinates
Rr507411	regulatory region 507411	1045 bp distal
Rr507412	regulatory region 507412	13 bp distal
Rr507413	regulatory region 507413	476 bp distal
Rr507414	regulatory region 507414	within coordinates
Tssr132563	transcription start site region 132563	within coordinates
Tssr132564	transcription start site region 132564	46 bp upstream
Tssr135780	transcription start site region 135780	159 bp upstream