rs247117469 SNP Detail

Summary

• ID
  rs247117469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133854432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGTGAAT CCAGTGGAGG
  GAGTGGCCAG CCCTAGCTGG GCTGACATTC TCTGTCTCAG CTGGGTCAGG GGAGCCTCAA
  TGGGGGCGAG GCCTCTGAAG ACAACCAGAT GCATGTAGAT CCACAAGCTC ACATGGATAC
  TTTCTCCAGA GTGTGCACAA AACCAGTGCC ACAACTACCC CCATGGACCC AATCTAATAC
  Y
  GCTGCAGCTG TACACGCCCC CATCACCCCC CTACACTGAA TCAGTCAGCT CCAACACGGG
  AGGCAGCCCG GGGGCAGCCA CCCTCAGGCA GGCAGGCAGG CAGACAGCAG AACCTACATG
  GGAAACAGGG TGACTCAGCC ATCATGGTCA TGTGCTGCCA GCCAGCCATG TGTTCCACAC
  ACATACACAC ATGCACACGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363332257	MGP_WTSI_4_133683036	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247117469					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363332257	MGP_WTSI_4_133683036	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133854432 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15028	CpG island 15028	1131 bp proximal
Gm68742	predicted gene, 68742	1822 bp downstream
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	285 bp downstream
Tssr39535	transcription start site region 39535	414 bp upstream
Tssr39536	transcription start site region 39536	497 bp upstream
Tssr39537	transcription start site region 39537	787 bp upstream
Tssr43866	transcription start site region 43866	506 bp downstream
Tssr43867	transcription start site region 43867	566 bp downstream
Tssr43868	transcription start site region 43868	602 bp downstream
Tssr43869	transcription start site region 43869	677 bp downstream
Tssr43870	transcription start site region 43870	830 bp downstream
Tssr43871	transcription start site region 43871	878 bp downstream
Tssr43872	transcription start site region 43872	908 bp downstream
Tssr43873	transcription start site region 43873	931 bp downstream
Tssr43874	transcription start site region 43874	961 bp downstream
Tssr43875	transcription start site region 43875	1559 bp downstream
Tssr43876	transcription start site region 43876	1586 bp downstream
Ubxn11	UBX domain protein 11	337 bp downstream