rs247119623 SNP Detail

Summary

• ID
  rs247119623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164752885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCTGGCC GGGCCGAGGG
  GCCGCGTCGC TACTGCTCTC CACCTCGTTC TCCTCCATTG GTTCTGGGGA CCGACTGACA
  GCGAAGCGCG GGGTTTGAGG CTTTCACTCT GCTGGGCGAT ACGACCATGG TTGCAACAAG
  TGGTCCACCT TTCGGGCCCG GCCAAGCAGA ACCCACCCAG ATGCACCGGT GTGCCCATTC
  Y
  GCAGATGCAA AGACTGAGCA TCGGACTAGA TGGGACGGGG TTTCCTGGAA AGGGAACCTT
  CCAGAAAAGA ATAGGGACGC CTGGCCTCTC AGGCTAGGAC CCTTTGGGAA GAAGGGTGGT
  CCCGGTGGGT GATCACGGCT CCTTGCTCCT CCCAGAGGCA TGAATCGACC CTGGGCGGAC
  ACAGCGGCCC GGCGCTCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356443488	MGP_WTSI_2_164736465	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247119623					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356443488	MGP_WTSI_2_164736465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164752885 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2210414I22Rik	RIKEN cDNA 2210414I22 gene			925 bp upstream
Cpgi12677	CpG island 12677			within coordinates
Rr367365	regulatory region 367365			within coordinates
Rr569758	regulatory region 569758			1299 bp distal
Rr569759	regulatory region 569759			1191 bp distal
Rr569760	regulatory region 569760			849 bp distal
Rr569761	regulatory region 569761			within coordinates
Rr569762	regulatory region 569762			363 bp proximal
Rr569763	regulatory region 569763			430 bp proximal
Rr569764	regulatory region 569764			744 bp proximal
Rr569765	regulatory region 569765			782 bp proximal
Rr569766	regulatory region 569766			932 bp proximal
Tssr21686	transcription start site region 21686			462 bp upstream
Tssr27593	transcription start site region 27593			210 bp downstream
Tssr27594	transcription start site region 27594			253 bp downstream
Tssr27595	transcription start site region 27595			293 bp downstream
Tssr27596	transcription start site region 27596			595 bp downstream
Tssr27597	transcription start site region 27597			621 bp downstream
Zfp335	zinc finger protein 335			Intron
				mRNA-UTR
Zfp335os	zinc finger protein 335, opposite strand			468 bp upstream