rs247124461 SNP Detail

Summary

• ID
  rs247124461
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:60216183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTTACA GAAGAAAGCC
  ACTGTGCCCA ACCTCAAATC AGGCTGCCTT GCCTGGTTTC AGTCCCCCCA AGACTCTCCC
  CCCAAGCATC AGGCTGATGT CAGAAGCTGG GGGTGGTGGT AGGGGTGTCA ATTCCTCCAT
  GGCTGGCTGT GTGACTTTAC ACATAGTTAC TCGACCTCTC TGGTTTTCCA TTTTCTCAGC
  A
  GAAAACTTCT GAACCAAGAA GACTTGAGCA CTGGATGTAG GAAGCAGGAA ATGAGCAAGC
  ACGGGTACAG GTGGTGTATA GTAATCTCCA TTACCCCTCC TCTTCCTGTC TGATGGACAC
  TCAGCCTTTC TCCATAGGCC TGTACTTATC TACCAGGGAA TAAGTAGTCT GAGTCTGCTA
  AGGAAGCAAG TTGCTATGGG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325236	CHEV_10_59843152	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247124461					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60216183 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdh23	cadherin related 23 (otocadherin)			Intron
				Noncoding-Transcript-Variant
Gm56993	predicted gene, 56993			1602 bp upstream
Rr368996	regulatory region 368996			805 bp upstream
Rr432129	regulatory region 432129			within coordinates
Rr432130	regulatory region 432130			612 bp proximal
Tssr93630	transcription start site region 93630			183 bp upstream
Tssr93631	transcription start site region 93631			242 bp upstream
Tssr97724	transcription start site region 97724			172 bp upstream