rs247125245 SNP Detail

Summary

• ID
  rs247125245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40367034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAAAGCG CCGGCGGCGA
  AGCGTGGGGG TGGACGAGCT GGACCACACC GCGCTGCCCT CGGGTGCGCC CTGAGGTTCT
  GGCACCTGCA GGGCGGGCAG CTGCAGGTTC TCCATCATGT TGGCCGCCGG CATCGGGGTC
  CCTGGCCGCT GCTCCGTGCC CTCCGCCTGC AGCCTGGCTC GAGGCTTCCT CTCTCGGCTC
  Y
  CTACCCTGGG GCCCGTGGCA CTATCCCCTC TCACGTTCAG CGGGAGGCTC GAGCCTGCCA
  GTAGATCAAG TTCCTTTTCC TGGAGCGCCG CGAGGAGGGG ACTGAAGGGG ACGCCGCCTC
  CTGCGGTCTA GAACTTTAAG AAGCGCGCTT CCTCGCTCAG TCCGACGAGG GAAGAGGCGA
  CCCGGGACGC AGTGACAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377313588	MGP_WTSI_9_40263323	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247125245					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377313588	MGP_WTSI_9_40263323	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40367034 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	313 bp distal
Rr676840	regulatory region 676840	within coordinates
Rr676841	regulatory region 676841	97 bp proximal
Tssr84449	transcription start site region 84449	417 bp downstream
Tssr84450	transcription start site region 84450	153 bp upstream
Tssr84451	transcription start site region 84451	1917 bp upstream
Tssr84452	transcription start site region 84452	1945 bp upstream
Tssr88934	transcription start site region 88934	354 bp upstream
Tssr88935	transcription start site region 88935	303 bp upstream
Tssr88936	transcription start site region 88936	282 bp upstream
Tssr88937	transcription start site region 88937	218 bp upstream
Tssr88938	transcription start site region 88938	36 bp downstream
Tssr88939	transcription start site region 88939	43 bp downstream
Tssr88940	transcription start site region 88940	99 bp downstream
Tssr88941	transcription start site region 88941	381 bp downstream
Tssr88942	transcription start site region 88942	399 bp downstream
Tssr88943	transcription start site region 88943	414 bp downstream
Tssr88944	transcription start site region 88944	457 bp downstream
Tssr88945	transcription start site region 88945	492 bp downstream
Tssr88946	transcription start site region 88946	574 bp downstream
Tssr88947	transcription start site region 88947	602 bp downstream
Tssr88948	transcription start site region 88948	649 bp downstream
Tssr88949	transcription start site region 88949	1734 bp downstream