rs247135807 SNP Detail

Summary

• ID
  rs247135807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:42111352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCTTGT AGGAAAACCT
  ACATTAGATC CTCTCACATC AGAAGCCCTT AATTTAGAAC CTAAATTTGC TCAGACACAG
  GCGCTCTGAT ACCTCGCAGT TGTTTACTCC ATGAACTGAG CGGTCAGAGG TCCATCACTG
  GCCCACGGAC AGAAGCCATT CCTTTCTGAT TTTGCCAAGT TGACCCTCTT CCTCCTCCTC
  Y
  CATCTCACGC CTGTTACATC AGTCCTGACC CTTGATGGTA CCGTCTGACA GATGATGCTC
  CCAGCAACTA CACACACTAC CTAGGACCCA AGTGCTGCAG TGTGGAGCTG ATGTAGGCTG
  ACCTGTCTCC CCTTCCCCTG GTCTGCTCCT TTGGATCAGG CCTATCTGCA GAGACCTCAT
  TTTTTCTTGC ACCCTGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	I/LnJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss402498923	MGP_WTSI_19_42197403	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	DBA/2J	I/LnJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs247135807					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402498923	MGP_WTSI_19_42197403	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:42111352 () rs orientation: forward

Symbol	Name	Function Class
Avpi1	arginine vasopressin-induced 1	362 bp downstream
Pi4k2a	phosphatidylinositol 4-kinase type 2 alpha	826 bp downstream
Rr547822	regulatory region 547822	366 bp distal