rs247143947 SNP Detail

Summary

• ID
  rs247143947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123279838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTCCCCG TCCAGGCGAG
  GGTTGTATCC TCCCAGGAAT GTGAAGGCTA GTGTGGTTCC AAACCTTGGT TTCCCTTCCC
  CAGCACAGCT CCTGGGAGGG AGGGGGCGTG CGGGCCAAAG AGGAAGCGGG ATCGGAGATA
  CCTCGATTGC AAACTCGTTT GGGGTCGACG TCTGCCTCCC CTCCAGGCTT CTAGTAGTCA
  Y
  ACACACGATC ACCCCCCACT CGAAACCCAG CCCTTTTCGC CGAGACTCCA CGCGTCCACC
  ACCGGCCTGG GCAGTTTGGA AACAGTTTGG GAGGCCCTGG GGGCGCACAC CGTGGAGTCT
  TCCGTAGCTG GAAGGGTAGC CCCAGCCGCG GGGGAGATAG AAGCCGTGGA GACCCCCCTC
  TCCCCCGTCA GCCAAGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366533358	MGP_WTSI_5_123591784	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247143947					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366533358	MGP_WTSI_5_123591784	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123279838 () rs orientation: forward

Symbol	Name	Function Class
AI480526	expressed sequence AI480526	within coordinates
Cpgi16577	CpG island 16577	within coordinates
Gm38102	predicted gene, 38102	within coordinates
Rr367945	regulatory region 367945	75 bp downstream
Rr378574	regulatory region 378574	1168 bp downstream
Rr399342	regulatory region 399342	250 bp downstream
Setd1b	SET domain containing 1B	418 bp upstream
Tssr48764	transcription start site region 48764	535 bp downstream
Tssr48765	transcription start site region 48765	339 bp downstream
Tssr48766	transcription start site region 48766	335 bp upstream
Tssr48767	transcription start site region 48767	412 bp upstream
Tssr48768	transcription start site region 48768	455 bp upstream
Tssr53210	transcription start site region 53210	1795 bp upstream
Tssr53211	transcription start site region 53211	1650 bp upstream
Tssr53212	transcription start site region 53212	1626 bp upstream
Tssr53213	transcription start site region 53213	1044 bp upstream
Tssr53214	transcription start site region 53214	681 bp upstream
Tssr53215	transcription start site region 53215	442 bp upstream
Tssr53216	transcription start site region 53216	413 bp upstream