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rs247165080 SNP Detail
Summary
  • ID
    rs247165080
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:116744566 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTTCCCCTCT CCCGCCGCTC
    CTGACTGAGG CTCGCTGCCT TGGTTTCACT TCTCGGGGCC TTTGCTCTCT ACGAAGGGAC
    GGGTAGTGTA GACCTAAAGT ACGCGCTAGC CACAGCGTGC GGCCGTACCC TCCCCTCCCC
    CCACGGGGCG CCGGGACTAC ATTTCCCGGC GGGCGCTGCG ACCAGACTCT GGTCAGCTGA
    Y
    CGGTCTCGTG ATCTGCTGTG AGTCAGGCCG GGAGGGCGGG CCCCAGCAGC TGCTACTGCT
    CGTCCTTGCC CCGGATCCCG TTCCCTGCAA CTGGAGTTGC GGCGGGTAGA CCCCGGGTCT
    CCTCTGCACT CGGTCGCGTC CCCGGAGGGT CCCGACTGTA CCGGTGGGGA GAGATTTCCC
    TTAAACCCAC GATTCCCATC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384861328 MGP_WTSI_11_116715054 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247165080 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss384861328 MGP_WTSI_11_116715054 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:116744566 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi4197 CpG island 4197 within coordinates
Mfsd11 major facilitator superfamily domain containing 11 within coordinates
Rr246191 regulatory region 246191 within coordinates
Rr403146 regulatory region 403146 445 bp downstream
Rr403147 regulatory region 403147 within coordinates
Srsf2 serine and arginine-rich splicing factor 2 646 bp upstream
Tssr106000 transcription start site region 106000 1520 bp downstream
Tssr106001 transcription start site region 106001 1166 bp downstream
Tssr106002 transcription start site region 106002 468 bp downstream
Tssr106003 transcription start site region 106003 259 bp downstream
Tssr106004 transcription start site region 106004 12 bp upstream
Tssr112005 transcription start site region 112005 1587 bp upstream
Tssr112006 transcription start site region 112006 1548 bp upstream
Tssr112007 transcription start site region 112007 1482 bp upstream
Tssr112008 transcription start site region 112008 1376 bp upstream
Tssr112009 transcription start site region 112009 1284 bp upstream
Tssr112010 transcription start site region 112010 641 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory