rs247188419 SNP Detail

Summary

• ID
  rs247188419
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131195777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGCACTGC ACAATCTACG
  GTTTAACCTG TGCCATTTCA ACACCATCAC CAAGTATCCG AAAATGGGTC GCAAATGAAT
  GAGCAGCAGG CTGGGAGGAG AGACAGCCAC CAGCTGACCC CCAGCAGATG AAAACTGAGC
  AAGGATGCCC GGGGCGGGGC GGCCTGTGGG GAGGCGGTGG CGACCAGAGC CACGTCCCCC
  R
  CTGGAGCCAC GTCCCCGCGC GCTCCGCAGG ACGCGCAGCC CGCAGCCCAT CCTCCTCCCG
  GCCCGGCGCT CACCGCTCGC AGCCGGTGCT CGCACGCCGG GGGCGCTCGC TGGGCGCAGA
  GGACCCGGGG GACCGGGCCC GAGAGCTGCA AACTTTGCGC GGGTCTCGCC CGCATAGGTA
  GCCGCTCCGC CCCAGGCCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359739299	MGP_WTSI_3_131152980	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	G	G	A	A	G	A	A	A	G	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247188419					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	G	G	A	A	G	A	A	A	G	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359739299	MGP_WTSI_3_131152980	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131195777 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13839	CpG island 13839			within coordinates
Gm36753	predicted gene, 36753			300 bp upstream
Rr585350	regulatory region 585350			1125 bp distal
Rr585351	regulatory region 585351			within coordinates
Rr585352	regulatory region 585352			389 bp proximal
Rr585353	regulatory region 585353			649 bp proximal
Sgms2	sphingomyelin synthase 2			Intron
				Noncoding-Transcript-Variant
Tssr1055	transcription start site region 1055			287 bp downstream
Tssr1056	transcription start site region 1056			within coordinates
Tssr31735	transcription start site region 31735			263 bp downstream
Tssr31736	transcription start site region 31736			335 bp upstream
Tssr31737	transcription start site region 31737			1543 bp upstream
Tssr35707	transcription start site region 35707			995 bp upstream
Tssr35708	transcription start site region 35708			966 bp upstream
Tssr35709	transcription start site region 35709			259 bp upstream
Tssr35710	transcription start site region 35710			242 bp upstream
Tssr35711	transcription start site region 35711			80 bp upstream
Tssr35712	transcription start site region 35712			50 bp upstream
Tssr35713	transcription start site region 35713			162 bp downstream
Tssr35714	transcription start site region 35714			436 bp downstream
Tssr35715	transcription start site region 35715			494 bp downstream
Tssr35716	transcription start site region 35716			637 bp downstream
Tssr35717	transcription start site region 35717			713 bp downstream
Tssr35718	transcription start site region 35718			731 bp downstream
Tssr35719	transcription start site region 35719			974 bp downstream
Tssr35720	transcription start site region 35720			1037 bp downstream
Tssr35721	transcription start site region 35721			1259 bp downstream
Tssr35722	transcription start site region 35722			1311 bp downstream
Tssr35723	transcription start site region 35723			1370 bp downstream
Tssr35724	transcription start site region 35724			1383 bp downstream
Tssr35725	transcription start site region 35725			1421 bp downstream