rs247197981 SNP Detail

Summary

• ID
  rs247197981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66591502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGG TCGGCGCCGC GGCGATCTGA
  R
  GCTTGCCCCG GCAAGTTGCG CTCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325661077	CHEV_18_66618085	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs247197981					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66591502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	within coordinates
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	173 bp upstream
Rr405709	regulatory region 405709	within coordinates
Rr539737	regulatory region 539737	within coordinates
Rr539738	regulatory region 539738	19 bp distal
Rr539739	regulatory region 539739	14 bp proximal
Rr539740	regulatory region 539740	173 bp proximal
Tssr151705	transcription start site region 151705	156 bp upstream