rs247199809 SNP Detail

Summary

• ID
  rs247199809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115149469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAATCCT TACACTGTCT
  ACACTGAGTC ACATAAAAAT CTCAGCTGTG ATGTTACCTG TCCTGAGATC CACCATAGCC
  CACCTTCCCA GTGTGGGTCA GACCGGCTTC TTGCCACAGA CCTGGAAATC ATTCATCACC
  TTTAGCACTG AGGCGTCTTA GAAAATATAT AATGTGAGCA CAATTGTTTT GTGTGTTCTT
  Y
  TGAGACAGGG TCTCACTGGG TAGCACTAGC TGGTCTGGAA CTTATTCTGC AGATCAAGTT
  GGCCTCCAAC TCAAGAGATC TGCTTGCTCT GCCTCCCGAG TCCTGGGGTT CAGGACAGAC
  AGGTGCCGCC ACCGCTGGAC TCCACAGTGC CATTTTTAGG CTGAAGAGCT AAATTAATTT
  TCCAGTTAAG CTTTCAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381864240	MGP_WTSI_10_114750620	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247199809					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381864240	MGP_WTSI_10_114750620	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115149469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	1250 bp proximal
Rab21	RAB21, member RAS oncogene family	within coordinates
Rr402237	regulatory region 402237	1900 bp upstream
Rr439191	regulatory region 439191	1472 bp distal
Rr439192	regulatory region 439192	290 bp distal
Tssr95806	transcription start site region 95806	1467 bp upstream
Tssr95807	transcription start site region 95807	1519 bp upstream
Tssr99318	transcription start site region 99318	1311 bp downstream
Tssr99319	transcription start site region 99319	1345 bp downstream
Tssr99320	transcription start site region 99320	1943 bp downstream
Tssr99321	transcription start site region 99321	1982 bp downstream