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rs247199852 SNP Detail
Summary
  • ID
    rs247199852
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44130158 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCATCACTT TCCTCTTCCT
TCCAATTCTC ATTTCCTTCC TCCTTTTCCT TAGTCCTGTC TACCACTACC TCTTCCTCCT
CCTCTCCCAC TGTCTTTTCC TGTGCTCACT CCCTTGCCCA CTCACCTTCT TTCAAGTTTC
TCCTTTATCT TCTTTACTCC TGGACAACCC CCCAGTATCA TCTTTTTAGT ATTTTCCTCC
Y
CCTTTTCTTC TTCCACCAGA TCTCTCCTTC ACTCCTACCC ATCTTTTATT CTTCCTTTTT
CTCTTCTTCT CCATCGTTAA TTCAACTCTT CTTTCCCTTC TGTTCCTCAA TTCTCCTCCT
CCCTGCTTCT TCATTTCTTT GAATACTATC CATCTTCATC CCTCTTTCTC TTCATTCCTC
TCTTCTACCC TTTCTTTTCC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156144 MGP_WTSI_7_51736104 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs247199852 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156144 MGP_WTSI_7_51736104 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130158 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646103 regulatory region 646103 1850 bp proximal
Tssr2227 transcription start site region 2227 1714 bp downstream
Tssr2228 transcription start site region 2228 651 bp downstream
Tssr2229 transcription start site region 2229 376 bp downstream
Tssr2230 transcription start site region 2230 193 bp downstream
Tssr2231 transcription start site region 2231 66 bp downstream
Tssr2232 transcription start site region 2232 107 bp upstream
Tssr2233 transcription start site region 2233 140 bp upstream
Tssr2234 transcription start site region 2234 299 bp upstream
Tssr2235 transcription start site region 2235 933 bp upstream
Tssr66288 transcription start site region 66288 1988 bp downstream
Tssr66289 transcription start site region 66289 1906 bp downstream
Tssr66290 transcription start site region 66290 1868 bp downstream
Tssr66291 transcription start site region 66291 1842 bp downstream
Tssr66292 transcription start site region 66292 1810 bp downstream
Tssr66293 transcription start site region 66293 1788 bp downstream
Tssr66294 transcription start site region 66294 1764 bp downstream
Tssr66295 transcription start site region 66295 1499 bp downstream
Tssr66296 transcription start site region 66296 1328 bp downstream
Tssr66297 transcription start site region 66297 1304 bp downstream
Tssr66298 transcription start site region 66298 1249 bp downstream
Tssr66299 transcription start site region 66299 1229 bp downstream
Tssr66300 transcription start site region 66300 1206 bp downstream
Tssr66301 transcription start site region 66301 1190 bp downstream
Tssr66302 transcription start site region 66302 1149 bp downstream
Tssr66303 transcription start site region 66303 1140 bp downstream
Tssr66304 transcription start site region 66304 1135 bp downstream
Tssr66305 transcription start site region 66305 1096 bp downstream
Tssr66306 transcription start site region 66306 1042 bp downstream
Tssr66307 transcription start site region 66307 993 bp downstream
Tssr66308 transcription start site region 66308 976 bp downstream
Tssr66309 transcription start site region 66309 926 bp downstream
Tssr66310 transcription start site region 66310 857 bp downstream
Tssr66311 transcription start site region 66311 834 bp downstream
Tssr66312 transcription start site region 66312 815 bp downstream
Tssr66313 transcription start site region 66313 805 bp downstream
Tssr66314 transcription start site region 66314 787 bp downstream
Tssr66315 transcription start site region 66315 780 bp downstream
Tssr66316 transcription start site region 66316 715 bp downstream
Tssr66317 transcription start site region 66317 699 bp downstream
Tssr66318 transcription start site region 66318 658 bp downstream
Tssr66319 transcription start site region 66319 630 bp downstream
Tssr66320 transcription start site region 66320 606 bp downstream
Tssr66321 transcription start site region 66321 582 bp downstream
Tssr66322 transcription start site region 66322 566 bp downstream
Tssr66323 transcription start site region 66323 528 bp downstream
Tssr66324 transcription start site region 66324 475 bp downstream
Tssr66325 transcription start site region 66325 434 bp downstream
Tssr66326 transcription start site region 66326 424 bp downstream
Tssr66327 transcription start site region 66327 404 bp downstream
Tssr66328 transcription start site region 66328 386 bp downstream
Tssr66329 transcription start site region 66329 347 bp downstream
Tssr66330 transcription start site region 66330 334 bp downstream
Tssr66331 transcription start site region 66331 320 bp downstream
Tssr66332 transcription start site region 66332 287 bp downstream
Tssr66333 transcription start site region 66333 252 bp downstream
Tssr66334 transcription start site region 66334 246 bp downstream
Tssr66335 transcription start site region 66335 235 bp downstream
Tssr66336 transcription start site region 66336 221 bp downstream
Tssr66337 transcription start site region 66337 205 bp downstream
Tssr66338 transcription start site region 66338 121 bp downstream
Tssr66339 transcription start site region 66339 89 bp downstream
Tssr66340 transcription start site region 66340 22 bp downstream
Tssr66341 transcription start site region 66341 within coordinates
Tssr66342 transcription start site region 66342 45 bp upstream
Tssr66343 transcription start site region 66343 77 bp upstream
Tssr66344 transcription start site region 66344 222 bp upstream
Tssr66345 transcription start site region 66345 255 bp upstream
Tssr66346 transcription start site region 66346 311 bp upstream
Tssr66347 transcription start site region 66347 349 bp upstream
Tssr66348 transcription start site region 66348 390 bp upstream
Tssr66349 transcription start site region 66349 414 bp upstream
Tssr66350 transcription start site region 66350 442 bp upstream
Tssr66351 transcription start site region 66351 450 bp upstream
Tssr66352 transcription start site region 66352 486 bp upstream
Tssr66353 transcription start site region 66353 560 bp upstream
Tssr66354 transcription start site region 66354 574 bp upstream
Tssr66355 transcription start site region 66355 601 bp upstream
Tssr66356 transcription start site region 66356 618 bp upstream
Tssr66357 transcription start site region 66357 632 bp upstream
Tssr66358 transcription start site region 66358 644 bp upstream
Tssr66359 transcription start site region 66359 670 bp upstream
Tssr66360 transcription start site region 66360 682 bp upstream
Tssr66361 transcription start site region 66361 708 bp upstream
Tssr66362 transcription start site region 66362 740 bp upstream
Tssr66363 transcription start site region 66363 757 bp upstream
Tssr66364 transcription start site region 66364 790 bp upstream
Tssr66365 transcription start site region 66365 810 bp upstream
Tssr66366 transcription start site region 66366 830 bp upstream
Tssr66367 transcription start site region 66367 858 bp upstream
Tssr66368 transcription start site region 66368 880 bp upstream
Tssr66369 transcription start site region 66369 914 bp upstream
Tssr66370 transcription start site region 66370 956 bp upstream
Tssr66371 transcription start site region 66371 1381 bp upstream
Tssr66372 transcription start site region 66372 1544 bp upstream
Tssr66373 transcription start site region 66373 1834 bp upstream
Tssr66374 transcription start site region 66374 1892 bp upstream
Tssr66375 transcription start site region 66375 1903 bp upstream
Tssr66376 transcription start site region 66376 1916 bp upstream
Tssr66377 transcription start site region 66377 1955 bp upstream
Tssr66378 transcription start site region 66378 1977 bp upstream
Tssr66379 transcription start site region 66379 1989 bp upstream
Tssr72201 transcription start site region 72201 1783 bp upstream
Tssr72202 transcription start site region 72202 926 bp upstream
Tssr72203 transcription start site region 72203 546 bp upstream
Tssr72204 transcription start site region 72204 41 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory