rs247214939 SNP Detail

Summary

• ID
  rs247214939
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:97795066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCAGCAA CCCTTCCACT
  CTGAGGTCAA AACTCTTCTA ATCCAAACCC CGATCCCATT CATAGGAAAC TGAGGCCTAG
  AAAAGTCCCA GTTAGTTAAA GGCAAAGTAA AGACTTGAAC CCACCATTGC CTTTCGATTT
  GAATGATAAG TACTGGCATT CCACGGGGGG GGGGGGGGGG GGGGGGCAGG GAGGGGGGTA
  S
  AGAGGGAGGA GCTAAAAATT CTATGTCAAA GACGTGCTTA CTTTAAAAAT GGCAGCCATA
  CAATCTGTCT CTTCTTTTGG AAATATTAAT ATGACAGATT TTCATCTTGC TGTTGCTACA
  TGACGAACAC GGGACCTAAT CTGCCGGGTG TTTTCTAGGC CAGAGTGGAG GAAGGGTCTG
  GGTTCAGGTG GAGCTAGCGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss358949076	MGP_WTSI_3_97691673	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/2J	JF1/MsJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs247214939					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358949076	MGP_WTSI_3_97691673	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97795066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	425 bp proximal
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	Intron
Rr581573	regulatory region 581573	947 bp proximal
Tssr34685	transcription start site region 34685	878 bp downstream
Tssr34686	transcription start site region 34686	936 bp downstream
Tssr34687	transcription start site region 34687	1077 bp downstream
Tssr34688	transcription start site region 34688	1161 bp downstream