rs247215876 SNP Detail

Summary

• ID
  rs247215876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67144204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCGAGG CAGAGCGGGC
  CTCCAGGGCT AAAGCAGAGA AGCAGCGCTC TGACCTCTCC CGGGAACTGG AGGAGATCAG
  CGAGAGGCTG GAAGAAGCTG GCGGAGCCAC TTCAGCCCAG ATCGAGATGA ACAAGAAGAG
  AGAGGCTGAG TTCCAGAAAA TGCGCAGGGA CCTGGAGGAG GCCACGCTGC AGCATGAAGC
  Y
  ACAGCAGCCG CTCTTCGGAA GAAGCACGCG GACAGCGTGG CTGAGCTCGG GGAGCAGATC
  GACAACCTGC AGCGGGTGAA GCAGAAGCTG GAGAAGGAGA AGAGCGAGCT GAAGATGGAG
  ATCGATGATC TCGCTAGTAA CATGGAGACA GTCTCCAAAG CCAAGGTCTT TCCTAACTTC
  CTAAATTATC TGAAATACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383730848	MGP_WTSI_11_67066880	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs247215876					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383730848	MGP_WTSI_11_67066880	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67144204 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3528	transcription start site region 3528	1355 bp upstream
Tssr3529	transcription start site region 3529	1411 bp upstream
Tssr102199	transcription start site region 102199	1643 bp downstream
Tssr102200	transcription start site region 102200	1492 bp downstream
Tssr102201	transcription start site region 102201	97 bp upstream
Tssr102202	transcription start site region 102202	619 bp upstream
Tssr102203	transcription start site region 102203	679 bp upstream
Tssr102204	transcription start site region 102204	1077 bp upstream
Tssr102205	transcription start site region 102205	1295 bp upstream
Tssr102206	transcription start site region 102206	1399 bp upstream
Tssr108532	transcription start site region 108532	1620 bp upstream
Tssr108533	transcription start site region 108533	1468 bp upstream
Tssr108534	transcription start site region 108534	774 bp upstream
Tssr108535	transcription start site region 108535	668 bp upstream
Tssr108536	transcription start site region 108536	666 bp downstream
Tssr108537	transcription start site region 108537	678 bp downstream
Tssr108538	transcription start site region 108538	1180 bp downstream
Tssr108539	transcription start site region 108539	1388 bp downstream
Tssr108540	transcription start site region 108540	1448 bp downstream